PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G049900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 312aa    MW: 35363.8 Da    PI: 7.9507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G049900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63e-33632031128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+P+d+e++ e+L++k+ ++       ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++   
  Manes.17G049900.1.p  63 LPAGVKFDPNDQEIL-EHLEAKILSDMrklhplIDEFIPtIEGEnGICYTHPEKLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVHtde 150
                          799***********9.99****998885665443333333665557**********.566667778******************744446 PP

                  NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v+s  g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Manes.17G049900.1.p 151 dgsETRWHKTGKTRPVFS-AGIVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 203
                          555788************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-3857222IPR003441NAC domain
PROSITE profilePS5100533.40663222IPR003441NAC domain
PfamPF023651.2E-1464203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTWCNNNSVD ERAIHLVTAC PKEDTVIDNK IDELRNITCP SCGHNIQMQD QAAGGIVHDL  60
PGLPAGVKFD PNDQEILEHL EAKILSDMRK LHPLIDEFIP TIEGENGICY THPEKLPGVS  120
NDGQIRHFFH RPSKAYTTGT RKRRKVHTDE DGSETRWHKT GKTRPVFSAG IVKGFKKILV  180
LYTNYGRQRK PEKTNWVMHQ YHLGHNEEEK DGELVVSKVF YQTQPRQCGS SIKDSLDQSL  240
RNRIDHHEHT TPIAKNPGLV DYYNPGLISY DHGSYHRESP PQLIPNMVVP GDGSSYYRLA  300
ADTSKGKIQR R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G049900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051650.0KR605165.1 Manihot esculenta NAC transcription factors 27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598209.10.0NAC domain-containing protein 73-like
RefseqXP_021598210.10.0NAC domain-containing protein 73-like
RefseqXP_021598211.10.0NAC domain-containing protein 73-like
RefseqXP_021598212.10.0NAC domain-containing protein 73-like
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0M3R8540.0A0A0M3R854_MANES; NAC transcription factors 27
STRINGcassava4.1_012314m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]
  4. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]