PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G074600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92190.7 Da    PI: 6.3311
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G074600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-192179357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Manes.16G074600.1.p 21 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                         5679*****************************************************97 PP
2START181.45.1e-571653732205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+++ +g  g
  Manes.16G074600.1.p 165 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNALPTGngG 253
                          7899******************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+ +
  Manes.16G074600.1.p 254 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPW 343
                          ************************************************99999************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s +  ++k+++a+l+++++
  Manes.16G074600.1.p 344 SVPEVLRPLYESPTLLAQKNTMAALRHLRQ 373
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7261680IPR001356Homeobox domain
SMARTSM003895.2E-161884IPR001356Homeobox domain
SuperFamilySSF466897.7E-172084IPR009057Homeodomain-like
CDDcd000867.99E-172181No hitNo description
PfamPF000462.2E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182379IPR009057Homeodomain-like
CDDcd146861.15E-673112No hitNo description
PROSITE profilePS5084825.853155355IPR002913START domain
CDDcd088751.37E-80159374No hitNo description
Gene3DG3DSA:3.30.530.201.3E-23164370IPR023393START-like domain
SuperFamilySSF559617.42E-39164376No hitNo description
SMARTSM002347.5E-44164374IPR002913START domain
PfamPF018522.4E-54165373IPR002913START domain
PfamPF086701.8E-51698838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MMAVTSSCKD GGSKIAMDNG KYVRYTPEQV EALERLYHDC PKPSSMRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY  120
FRQQTNATNL ATTDTSCESV VTSGQHHLTP QRPPRDASPA GLLSIAEETL AEFLSKATGT  180
AVEWVQMPGM KPGPDSIGIV AISHGCPGVA ARACGLVGLE PTRVAEILKD RPSWFRDCRA  240
VDVLNALPTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN  300
GPSMPPTQHF VRAEMLPSGY LIRPCEGGGS IIHIVDHVDL EPWSVPEVLR PLYESPTLLA  360
QKNTMAALRH LRQISQEVSQ PNGSGWGRRP AALRALSQRL SKGFNEAVNG FTDDGWSMLE  420
SDGIDDVTVL VNSSPGKMMG LNISYANGFP SMSNGVLCAK ASMLLQNVPP AILLRFLREH  480
RSEWADSGID AYAAAAVKAG PCTLPVSRVG NFGGQVILPL AHTIEHEEFM EVIKLENMGY  540
REDMLMPGDI FLLQLCSGVD ENAVGTCAEL IFAPIDASFS DDAPIIPSGF RIIPLDSRMD  600
ATSPNRTLDL TSALDVGPTG NKASGDLSGN CGSTKSVMTI AFQFAFELHL QENVASMARQ  660
YVRSVIASVQ RVALALSPSH FGSHAGLRPP PGTPEAHTLA RWVCQSYRIY LGVELLKSEG  720
SESILKSLWH HTDAVMCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KIFDDNGRKT  780
LCSEFPQIMQ QGFMCLQGGI CLSSMGRPVS YERAVAWKVL NEEETAHCIC FMFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G074600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196230.0AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597909.10.0homeobox-leucine zipper protein ATHB-15-like
RefseqXP_021597910.10.0homeobox-leucine zipper protein ATHB-15-like
RefseqXP_021597912.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2C9UAL80.0A0A2C9UAL8_MANES; Uncharacterized protein
STRINGcassava4.1_001673m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]