PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G021300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 875aa    MW: 96056.9 Da    PI: 7.6875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G021300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18332431198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +
  Manes.16G021300.1.p 332 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISHPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQNMRLQAGDIVTFSRLE 420
                          89**************************555666777***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Manes.16G021300.1.p 421 -PEGKLVMGFRK 431
                          .77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135904198IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.109.4E-31328440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20329431IPR015300DNA-binding pseudobarrel domain
CDDcd100174.99E-23330431No hitNo description
PROSITE profilePS5086311.335332433IPR003340B3 DNA binding domain
SMARTSM010191.3E-20332433IPR003340B3 DNA binding domain
PfamPF023626.1E-16332431IPR003340B3 DNA binding domain
PROSITE profilePS5105013.886557607IPR011124Zinc finger, CW-type
PfamPF074969.9E-13562604IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MSTAPSSSSS SMSKKCFNSD CTDFKSRKGW RLRSGDFAEL CDRCSSAYEE GRFCDTFHLN  60
ATGWRCCESC GKRVHCGCIV SIHAFTLLDA GGIECMACSR KNVLLTSNST WSPSLFYNAP  120
LSERFKDLSV KSWSQLAGSG PVPWRQAPNF FSSCVPHSEL HPRTLYEIDR HNTGERSSAP  180
YLEKGRIEDF SDRLINGGLK LGTRDLRENG NAGKSSDEKP GLCLGISQQP SLKEDPSAPQ  240
LGMALPFASL NESNGQIGGS GTPLRQPAPP LVAKQFHGNG TDSSPDTQIR NGRPRADARG  300
RSQLLPRYWP RFTDEELQQI SGNSNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP  360
ISHPEGLPLK VQDSKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQNMRLQA GDIVTFSRLE  420
PEGKLVMGFR KASTAPSSDQ DNDTSKTNGV PTNGDVEMAD PSPWSKVDKS GYIAKEVLEA  480
KSSKKRKSST LGSKSKRLRI ENEDVIELKL TWEEAQGLLR PPPDLVPSVV VIEGFEFEEY  540
EDAPVLGKPT IFATDNLGQK FQWVQCEDCF KWRKLPANAL LHSKWTCSGN TWDPERSSCS  600
AAQELTAEQL EDLLPSCNLA ASKKMKAAKQ EADNVEAMEG LDTLANLAIL GENEALTTSS  660
QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCQT VKRRFKTLMM KREKKQSEKE  720
AESTKKRQQQ TLPEKYLDDD PSPSTNTGSS SPNKKKVVSE GSDDDPNKIK SSTSPFKGQI  780
DLNIQPEREE ELSPGSDSGS MMKMIQDATD RYLRQQRLNS DGDNISAGNQ TLACHEIGEK  840
VSNGILLGSS HQDSDKGHPA TFSVEVSASS PAAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-643104351126B3 domain-containing transcription repressor VAL1
5yzz_C1e-643104351126B3 domain-containing transcription repressor VAL1
5z00_C1e-643104351126B3 domain-containing transcription repressor VAL1
5z00_G1e-643104351126B3 domain-containing transcription repressor VAL1
5z00_K1e-643104351126B3 domain-containing transcription repressor VAL1
5z00_M1e-643104351126B3 domain-containing transcription repressor VAL1
6j9a_A1e-643104352127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G021300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597030.10.0B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2C9U7T50.0A0A2C9U7T5_MANES; Uncharacterized protein
STRINGcassava4.1_001573m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-180high-level expression of sugar-inducible gene 2