PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G174800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34476.6 Da    PI: 6.7488
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G174800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1885137456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + +++ eq+++Le++Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Manes.15G174800.1.p  85 KKRLNLEQVKALEKCFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 137
                          4568889*********************************************9 PP
2HD-ZIP_I/II129.61.2e-4183175193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl+ eqvk+LE++Fe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk+++da+k++n++L++++++L++e
  Manes.15G174800.1.p  83 EKKKRLNLEQVKALEKCFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFDAIKADNDALQAQNKKLHSE 172
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          l++
  Manes.15G174800.1.p 173 LMA 175
                          975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1955140IPR009057Homeodomain-like
SuperFamilySSF466891.54E-1975141IPR009057Homeodomain-like
PROSITE profilePS5007116.69879139IPR001356Homeobox domain
SMARTSM003891.4E-1782143IPR001356Homeobox domain
CDDcd000862.25E-1584140No hitNo description
PfamPF000461.2E-1585137IPR001356Homeobox domain
PRINTSPR000311.1E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5119135IPR000047Helix-turn-helix motif
PfamPF021835.4E-16139179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAFPPHHHSF IFHPHEDNDH LPSPSSLNSL PSSCPPQLFP GLSPAGGGGH FMMKRSMSFS  60
GMEKCEEVHG DDDLSDDGSQ LGEKKKRLNL EQVKALEKCF ELGNKLEPER KMQLAKALGL  120
QPRQIAIWFQ NRRARWKTKQ LEKDYEVLKK QFDAIKADND ALQAQNKKLH SELMALRHRE  180
PNSTEFNPKK ETDQGSWSNA SENSCDINLD ISRTPLETSP VSNSQLSTKH LFTTASIRPT  240
SMTQLLQSSS SRQDLHCLKV DQMVQDENFC NMFNGMDEHQ GFWQWPAEQH AAFSLNQTQF  300
SNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G174800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595760.10.0homeobox-leucine zipper protein ATHB-20-like
SwissprotQ004664e-84HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A2C9UGZ00.0A0A2C9UGZ0_MANES; Uncharacterized protein
STRINGcassava4.1_014568m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.12e-67homeobox protein 20