PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G169500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 362aa    MW: 40808.2 Da    PI: 5.2519
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G169500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.3e-5461331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL++kv+g ++el evi+ +d+yk++PwdLp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgk
  Manes.15G169500.1.p   6 LPPGFRFHPTDEELVGYYLHRKVQGLEIEL-EVIPVIDLYKFDPWDLPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGK 94 
                          79****************************.99**************95344555788******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v++ ++e++g +ktLvfy+grap g +tdWvmheyrl
  Manes.15G169500.1.p  95 DRKVVC-QSEVTGYRKTLVFYRGRAPFGDRTDWVMHEYRL 133
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-624156IPR003441NAC domain
PROSITE profilePS5100558.4146156IPR003441NAC domain
PfamPF023652.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLHRKVQG LEIELEVIPV IDLYKFDPWD LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSEVTGYRKT LVFYRGRAPF  120
GDRTDWVMHE YRLCDDVSQG SSSFQGAFAL CRVVKKNDQG HKTSDSHGEP KTKNICSSSN  180
NGGFTSAVIS NEHMSASGDI SQITHLHNEC HHSSPIASPY QLTAVAEFET LPMENNPSSL  240
WVSPDLILDS SKDYPQIQEA ASGYFPQYEY PSSMTPFQPY EHREFSSSSS YSNFTGEFKT  300
VDDLSRIGYM SPYSGHGNYL GFSGNEDIPY EGQFADKQVE DGSFGEYGGL WCQEDNMVVV  360
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-54516216171NO APICAL MERISTEM PROTEIN
1ut4_B1e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_A1e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_B1e-54516216171NO APICAL MERISTEM PROTEIN
4dul_A1e-54516216171NAC domain-containing protein 19
4dul_B1e-54516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G169500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051620.0KR605162.1 Manihot esculenta NAC transcription factors 24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593662.10.0NAC domain-containing protein 71-like
SwissprotO496971e-106NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A2C9UGZ20.0A0A2C9UGZ2_MANES; Uncharacterized protein
STRINGcassava4.1_011029m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-108NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]