PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G141700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 521aa MW: 56958 Da PI: 6.9274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G141700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	417	449	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq Manes.15G141700.1.p 417 DRITALQQIVSPF-----GKTDTASVLLEAIQYIKFLQ 449 6788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.188	399	448	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-9	414	456	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-10	414	466	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.25E-5	417	453	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MAQECSESSV AISSSTPSAA AAAAAGWWDL HHHASSLSSW TNHNINSSTT CSPWHQPNPS 60 SNSSCEEDVS MSTSFTNASN HSGLTVESSR RFIEPAASSP SEFMGEHASD SQLWSHILFG 120 VGSNGELHNI QDVGENLLDA LSSKSISSGI FEPACDYLKK MDNNWEYTNA PSFTSFDHKP 180 INGFSTDHHS FIESERVTKL SNLVRNWSIA PPDPGVEVSR ETIDPITCNI SLSSSLNHYT 240 HPQTYSDSAS FGTGMNRKSG FLSCYGHDLK VENEHRHVDI PGYIFRRSFN GNGIGNHIGL 300 SSGSVVADNS KYYHGVPDNT CTSARTFTDG AAFNGRYSKP LIDIQGPKPF FKSLNLSDCG 360 KQGVQNSLST GRGQGNTSEG KKKRSEHTSE IVLKKPKHES STVSSAKMQV PKVKLGDRIT 420 ALQQIVSPFG KTDTASVLLE AIQYIKFLQE QVQLLSSPYM KNNAHKDPWG LEKKEKGDVQ 480 LDLRSRGLCL VPISCTPQVY HENTGSDYWT PTYRSGCLYR *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MAQECSESSV AISSSTPSAA AAAAAGWWDL HHHASSLSSW TNHNINSSTT CSPWHQPNPS  60
SNSSCEEDVS MSTSFTNASN HSGLTVESSR RFIEPAASSP SEFMGEHASD SQLWSHILFG  120
VGSNGELHNI QDVGENLLDA LSSKSISSGI FEPACDYLKK MDNNWEYTNA PSFTSFDHKP  180
INGFSTDHHS FIESERVTKL SNLVRNWSIA PPDPGVEVSR ETIDPITCNI SLSSSLNHYT  240
HPQTYSDSAS FGTGMNRKSG FLSCYGHDLK VENEHRHVDI PGYIFRRSFN GNGIGNHIGL  300
SSGSVVADNS KYYHGVPDNT CTSARTFTDG AAFNGRYSKP LIDIQGPKPF FKSLNLSDCG  360
KQGVQNSLST GRGQGNTSEG KKKRSEHTSE IVLKKPKHES STVSSAKMQV PKVKLGDRIT  420
ALQQIVSPFG KTDTASVLLE AIQYIKFLQE QVQLLSSPYM KNNAHKDPWG LEKKEKGDVQ  480
LDLRSRGLCL VPISCTPQVY HENTGSDYWT PTYRSGCLYR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G141700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594263.1	0.0	transcription factor bHLH111-like
TrEMBL	A0A2C9UFM8	0.0	A0A2C9UFM8_MANES; Uncharacterized protein
STRING	cassava4.1_005583m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	6e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.15G141700.1.p