PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G014400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 1136aa MW: 126268 Da PI: 8.4876

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G014400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.4e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ W++I +t+ R+ +++ Manes.15G014400.1.p 46 QWSKEELERFYKAYRKHGKD-WEKITATVR-DRSVENV 81 6***************99.*******.9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-9	41	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.494	42	95	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	2.4E-4	46	78	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-7	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	7.17E-5	47	81	No hit	No description
SMART	SM01135	5.5E-56	599	700	IPR033471	DIRP domain
Pfam	PF06584	2.3E-32	599	699	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1136 aa Download sequence Send to blast
MAPSRKSRSV NKRFSYINEA TSNKNGENTN KSRQRKRKLS DMLGPQWSKE ELERFYKAYR 60 KHGKDWEKIT ATVRDRSVEN VEALYTMNRA YLSLPRGYAS AAGLIAMMTD HYSNLEESES 120 EQETNEPVVA HQKPQKGARG TKELDASPAP DLVQSQSGAS NYGCLSLLKK RRSGSRPWAV 180 GKRTPRVPVS YSFDKDNREK YISPIRQGLK LKGDALDDDV AHEIALVLTE ASQKAGSPQV 240 SQTPKRKPET PSPVRNGEHV PAESETTSTK LRGSEMDEGG CELSLGRTEA DLGHYVRNKR 300 FAKGKRYHVR KPEVEENVDD HLDDLKEACS GTEEGQKLGA VKGKLEMEGL GTKLVRSSSK 360 GPRKRSKKVL FGEGEADAFD ALQALADLSL RLPEAPVDTE SSVHVEEQKN EIVSKTKLKG 420 NHSTPRVKVA SKTTKQGKGF PHVVKSIPEV KDGDHQINVG IRKRRKKSLP SKGTDDVSHL 480 INKAKCSHDS AYQKQGKLMK SQELTSTDHG RDSNDSAPSS IQVLSSNQFN LPTKVRSRRK 540 VKSPKPSIDK DAPSSENIVN GQYNIAIPSL NDNAFNLKKK LSNCLSWYQV RRWCVFEWFY 600 SAIDYPWFAK REFVEYLDHV GLGHIPRLTR VEWGVIRSSL GKPRRFSEQF LKEEKEKLNQ 660 YRESVRNHYT ELRAGTRDGL PTDLARPLSV GQRIIALHPR TREIHDGSVL TVDHNRCRVQ 720 FDEPELGVEF VMDVDCMPLN PLENMPASLT RHNIFFNKFI ENLNDIKMNG QPMERKVEGY 780 IKLAPCENLE NGTGFPHTSP STHLISNLFQ HAKGGSTNST MQVSVESGEP VIAQPFILAH 840 VQAKEADIQA LSELTRALDK KEAVVSELKR LNDEVENQKN GENSLNDSEL FKKHYAAVLL 900 QLNEVNEQVS SALYCLRQRN TYQGNNPHIW LKPIICIGEP AGSCGSVDHS ADETQEPGSH 960 VSEIVESSRA KAQTMVDAAM QALSSLKKGG SGFESIEEAI DFVNNQLSVD DLSTASMQTS 1020 TTANLAHSSL ASQDQPSSCA TNVGTNNHAP GTHLDLISDQ NEAQIPSELI TQCVATLLMI 1080 QKCTERQFPP SDVAQVLDSA VTSLKPCCSQ NLPIYADIQK CMGIIRNQIL ALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1136 aa Download sequence Send to blast

MAPSRKSRSV NKRFSYINEA TSNKNGENTN KSRQRKRKLS DMLGPQWSKE ELERFYKAYR  60
KHGKDWEKIT ATVRDRSVEN VEALYTMNRA YLSLPRGYAS AAGLIAMMTD HYSNLEESES  120
EQETNEPVVA HQKPQKGARG TKELDASPAP DLVQSQSGAS NYGCLSLLKK RRSGSRPWAV  180
GKRTPRVPVS YSFDKDNREK YISPIRQGLK LKGDALDDDV AHEIALVLTE ASQKAGSPQV  240
SQTPKRKPET PSPVRNGEHV PAESETTSTK LRGSEMDEGG CELSLGRTEA DLGHYVRNKR  300
FAKGKRYHVR KPEVEENVDD HLDDLKEACS GTEEGQKLGA VKGKLEMEGL GTKLVRSSSK  360
GPRKRSKKVL FGEGEADAFD ALQALADLSL RLPEAPVDTE SSVHVEEQKN EIVSKTKLKG  420
NHSTPRVKVA SKTTKQGKGF PHVVKSIPEV KDGDHQINVG IRKRRKKSLP SKGTDDVSHL  480
INKAKCSHDS AYQKQGKLMK SQELTSTDHG RDSNDSAPSS IQVLSSNQFN LPTKVRSRRK  540
VKSPKPSIDK DAPSSENIVN GQYNIAIPSL NDNAFNLKKK LSNCLSWYQV RRWCVFEWFY  600
SAIDYPWFAK REFVEYLDHV GLGHIPRLTR VEWGVIRSSL GKPRRFSEQF LKEEKEKLNQ  660
YRESVRNHYT ELRAGTRDGL PTDLARPLSV GQRIIALHPR TREIHDGSVL TVDHNRCRVQ  720
FDEPELGVEF VMDVDCMPLN PLENMPASLT RHNIFFNKFI ENLNDIKMNG QPMERKVEGY  780
IKLAPCENLE NGTGFPHTSP STHLISNLFQ HAKGGSTNST MQVSVESGEP VIAQPFILAH  840
VQAKEADIQA LSELTRALDK KEAVVSELKR LNDEVENQKN GENSLNDSEL FKKHYAAVLL  900
QLNEVNEQVS SALYCLRQRN TYQGNNPHIW LKPIICIGEP AGSCGSVDHS ADETQEPGSH  960
VSEIVESSRA KAQTMVDAAM QALSSLKKGG SGFESIEEAI DFVNNQLSVD DLSTASMQTS  1020
TTANLAHSSL ASQDQPSSCA TNVGTNNHAP GTHLDLISDQ NEAQIPSELI TQCVATLLMI  1080
QKCTERQFPP SDVAQVLDSA VTSLKPCCSQ NLPIYADIQK CMGIIRNQIL ALIPT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G014400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY486820	3e-55	AY486820.1 Hevea brasiliensis clone gHbCIRA2682 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594724.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A2C9UBZ3	0.0	A0A2C9UBZ3_MANES; Uncharacterized protein
STRING	cassava4.1_000519m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Manes.15G014400.1.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]