PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G125900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 261aa    MW: 29442 Da    PI: 4.4806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G125900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08157201655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ r RR++i ++ +eL +l+P        K++ ae+L+ A +Y+k Lq
  Manes.14G125900.1.p 157 SIAARERRRKITEKTQELGKLIPGG-----SKMNTAEMLQAASQYVKFLQ 201
                          67889******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-12151211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.135151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-9154205No hitNo description
Gene3DG3DSA:4.10.280.102.9E-12154221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-11157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MALSFCSCNH HQELTDDYQL LGFNDNFMSV FSDSFINPLF EFDDQLFYSD SYTNLLPYFS  60
SSPSDNIMSL SPDIFPLQDF DSYQYPKRQK SYADISRSSS APSFFDGFVA NSDLLLPEFP  120
APALPKFQVP EAAFNEGRSD CSAVAKKPNG ESLSAQSIAA RERRRKITEK TQELGKLIPG  180
GSKMNTAEML QAASQYVKFL QAQVKLLQLM ESRRQENEES HLQTSELQIL LASPTIQEKL  240
YSQEKCLVPR EFLQTIANDE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G125900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634874.11e-168transcription factor bHLH52
TrEMBLA0A2C9UMC10.0A0A2C9UMC1_MANES; Uncharacterized protein
STRINGcassava4.1_024205m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-37bHLH family protein