PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G089600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 571aa MW: 63233.6 Da PI: 9.6143

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G089600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.1	3.2e-18	265	314	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P+ ++K +Ka+ L +++eYI+ Lq Manes.14G089600.1.p 265 RSKHSATEQRRRSKINDRFQKLRELIPHG----DQKRDKASFLLEVIEYIQFLQ 314 889***********************7....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.1E-25	260	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-19	261	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.149	263	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.70E-15	265	318	No hit	No description
Pfam	PF00010	1.4E-15	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-14	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MELPQQQRLF ETEGRKPAHD FLSLCSHSIV QQDPKPHSQG YLKTQDFLRP LERIGKVTAK 60 EETTVDISLL EKPLPPAPPP SVGHILPGGI GTFSISHVSN CFNQRISKPE SSAIFTVARA 120 SSTEKNEEDS NCSSYTGSGF TPWEESALKK GKTRKEKEEE RSNTVRETAA KAKAGHWTSS 180 DRPSPSSTNT HRNSFSSLSS SKPSGKKGQS FLEMIKSAKD SADDDNLDDE EKFVLKKETP 240 SPIHKGELRV KVDEKSTDHK TNTPRSKHSA TEQRRRSKIN DRFQKLRELI PHGDQKRDKA 300 SFLLEVIEYI QFLQEKVQKY EGSYQGWNDE PAKLVPWRNG NRPSESCVDQ PRGMNSGAGP 360 ALLFAAKFDE KNINIVPTIP GNTRNPVESD MNSTSAFELL DQHPGITNKA MSFPMPLQPN 420 FFNSSRTGGA VAQVPPRLIS DAENRTSQSQ PQNQTHHTRS FTNNGAVAID KLKEKELSIE 480 GGTINISSAY SQGLLNTLTQ ALQSCGVDLS QASISVQIEL GKRPNKRPIT PTSIFKDNEI 540 PSNNQGTIWP RVSSGEESHQ ALKKLKTRKS *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MELPQQQRLF ETEGRKPAHD FLSLCSHSIV QQDPKPHSQG YLKTQDFLRP LERIGKVTAK  60
EETTVDISLL EKPLPPAPPP SVGHILPGGI GTFSISHVSN CFNQRISKPE SSAIFTVARA  120
SSTEKNEEDS NCSSYTGSGF TPWEESALKK GKTRKEKEEE RSNTVRETAA KAKAGHWTSS  180
DRPSPSSTNT HRNSFSSLSS SKPSGKKGQS FLEMIKSAKD SADDDNLDDE EKFVLKKETP  240
SPIHKGELRV KVDEKSTDHK TNTPRSKHSA TEQRRRSKIN DRFQKLRELI PHGDQKRDKA  300
SFLLEVIEYI QFLQEKVQKY EGSYQGWNDE PAKLVPWRNG NRPSESCVDQ PRGMNSGAGP  360
ALLFAAKFDE KNINIVPTIP GNTRNPVESD MNSTSAFELL DQHPGITNKA MSFPMPLQPN  420
FFNSSRTGGA VAQVPPRLIS DAENRTSQSQ PQNQTHHTRS FTNNGAVAID KLKEKELSIE  480
GGTINISSAY SQGLLNTLTQ ALQSCGVDLS QASISVQIEL GKRPNKRPIT PTSIFKDNEI  540
PSNNQGTIWP RVSSGEESHQ ALKKLKTRKS *

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G089600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592601.1	0.0	transcription factor BIM1-like
Swissprot	Q9LEZ3	1e-109	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2C9UL38	0.0	A0A2C9UL38_MANES; Uncharacterized protein
STRING	cassava4.1_004528m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-100	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.14G089600.1.p

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]