PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G108800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | AP2 | ||||||||
Protein Properties | Length: 633aa MW: 70853.5 Da PI: 6.742 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.1 | 1.4e-15 | 316 | 375 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Manes.13G108800.1.p 316 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDLEEKAARAYDLAALKYWG 375 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46.5 | 9e-15 | 418 | 469 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Manes.13G108800.1.p 418 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 469 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-17 | 316 | 385 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.71E-22 | 316 | 383 | No hit | No description |
Pfam | PF00847 | 1.7E-12 | 316 | 375 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 317 | 384 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-29 | 317 | 389 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.388 | 317 | 383 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 318 | 329 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.19E-25 | 418 | 476 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-17 | 418 | 478 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-9 | 418 | 469 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.821 | 419 | 477 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-17 | 419 | 476 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 419 | 483 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-6 | 459 | 479 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MKSMNNGDHN NNNNSNWLGF SLSPHHMKIE APSASAPTAI PTSFFDSQSH SQLNYGSYCG 60 VEGENRGLYS SLPAMPLKSD VSLCVMEALT MSQPQATMMT TSTPKLEDFF GGATMGTHHY 120 GTNDREATDP SLDSMYYHQD PDHHPTNQTC LNHLQQNHRH QQLPRQIFQV QHYPYFINNF 180 RSHEMLVGEK SKETQQVSDC SLQLPTIGDD EINGMRNWDS RCPDYHAMDQ QKMISCMGEY 240 GGETADISAM AYGDLQSLGL SMSPGSQSSC VTGSQQVSPA VTDCTAMETK KRGPDKVDQK 300 QTVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ VYLGGYDLEE 360 KAARAYDLAA LKYWGPSAHI NFPLENYQNE LAEMKNMTRQ EYVAHLRRKS SGFSRGASIY 420 RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV NAVTNFGITR 480 YDVERIMASN TLLSGELARR IKDLGSGNEA TNYNPSTQNS IEEVIPSQKN YESDWKMAFY 540 QSSQQQLDQK AANVIDNYKT QAFALAPENV IGTDVMSSVH QQDVEDSTKV EAHVSNASSL 600 VTSLSSSREG SQIELVFQCF LQCLPQQRPS CS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G108800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021649956.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-141 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2C9USR3 | 0.0 | A0A2C9USR3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003598m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-137 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G108800.1.p |