PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G077500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NF-YB | ||||||||
Protein Properties | Length: 183aa MW: 20111.8 Da PI: 4.7224 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 111.8 | 3.8e-35 | 6 | 70 | 33 | 97 |
NF-YB 33 etvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 e ecvsefisf+t+easdkcq+ekrktingddllwa++tlGfe+yv plkvyl+kyre+egek Manes.13G077500.1.p 6 EEGAECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEK 70 55679**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00615 | 3.3E-18 | 8 | 26 | No hit | No description |
Pfam | PF00808 | 2.1E-12 | 9 | 44 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.6E-25 | 9 | 81 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.0E-33 | 9 | 100 | IPR009072 | Histone-fold |
PROSITE pattern | PS00685 | 0 | 11 | 27 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 3.3E-18 | 27 | 45 | No hit | No description |
PRINTS | PR00615 | 3.3E-18 | 46 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEEEEEEGAE CVSEFISFIT GEASDKCQKE KRKTINGDDL LWAMTTLGFE NYVGPLKVYL 60 NKYRETEGEK NSMARQEDHQ SPPPAAAAGA GGNSSDNHGN EMNKVNGYVS TEVDFQGFNS 120 GFYSLGAQVS RKSSYGENSR FVGYGDHLVD AAASFNMNRK RENGDANNNR PMAAHIHHGV 180 EW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 6e-27 | 2 | 65 | 29 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 6e-27 | 2 | 65 | 29 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G077500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631811.1 | 1e-129 | nuclear transcription factor Y subunit B-3-like, partial | ||||
TrEMBL | A0A2C9UPU0 | 1e-133 | A0A2C9UPU0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026597m | 1e-118 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 5e-39 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G077500.1.p |