PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G063500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 489aa    MW: 53147.2 Da    PI: 6.6038
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G063500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29108165260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++e+s+ d+++ +i+Y g+H+h+k
  Manes.13G063500.1.p 108 EDGYHWRKYGQKLVKGNEFIRSYYKCTHPNCSVKKQLEHSQ-DGQIADIIYFGQHDHPK 165
                          7***************************************9.***************85 PP
2WRKY102.22.9e-32275333159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCp+kk+ver+++d+k+v++ Yeg+H h+
  Manes.13G063500.1.p 275 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPAKKHVERASHDTKMVITSYEGQHYHD 333
                          58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.472102166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-25102165IPR003657WRKY domain
SuperFamilySSF1182901.7E-23103165IPR003657WRKY domain
SMARTSM007743.1E-32107165IPR003657WRKY domain
PfamPF031069.6E-23108164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-35261335IPR003657WRKY domain
SuperFamilySSF1182908.89E-29267335IPR003657WRKY domain
PROSITE profilePS5081135.026270335IPR003657WRKY domain
SMARTSM007742.8E-37275334IPR003657WRKY domain
PfamPF031062.1E-25276332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVSSREGTDE FASDKLQKTQ SSDSGSHTTQ QIDDNVIHTA QDEEVTTVTP DKTLQDGNAG  60
IHISQLEKEG SISSTMPGKV SQIPGTGSSS LQSGQASKTP IVREKVSEDG YHWRKYGQKL  120
VKGNEFIRSY YKCTHPNCSV KKQLEHSQDG QIADIIYFGQ HDHPKSEQNL PLAVGFVLSV  180
KEMADEPSST GTEEDHASHL LKSTSTSQIS AVTKSENKKG ELSESNKIKD EVENDDDPRS  240
KRQKKGNRIV EPVAVDKPTS EPRLVIQTLS EVDIVNDGYR WRKYGQKLVK GNPNPRSYYR  300
CSNPGCPAKK HVERASHDTK MVITSYEGQH YHDMPPSRTI THNATSLSAC TSNINIGESS  360
IKSGPSDGVA QNSSDPSGNS KEQVNSKSRS KYKGSELKGS DMVIHSRSGG DSKSSELWNE  420
KPSVTEGSGA VVVNSSSISE CRSIEQRDGE STTESKVNCA IYSAPAIASG SETHPNEQHI  480
PNAEPVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-36106336275WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G063500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276040.0KT827604.1 Manihot esculenta WRKY transcription factor 29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633791.10.0WRKY transcription factor 1-like
TrEMBLA0A2C9UPK90.0A0A2C9UPK9_MANES; Uncharacterized protein
STRINGcassava4.1_008041m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.24e-95zinc-dependent activator protein-1