PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G055700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 268aa MW: 31384.5 Da PI: 10.117 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 95.9 | 4.6e-30 | 51 | 138 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+ Manes.13G055700.1.p 51 FYDAYATRLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 138 9*******************************************99.9***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-28 | 51 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MDEQPSMSED GDVNHIVESS SGKEVTTSEG SSDIEPYVGM EFESEEAAKV FYDAYATRLG 60 FIMRVDAFRR SMRDGKVVWR RLVCNKEGFR KLRPRRSENR KPRAITREGC KAMIVVKKEK 120 TGKWVVTRFV KEHNHPLVAI PSNGRRSVLL SQTPDEKDVK IRELTAELQR ERKRSAAYQE 180 QLYMVLREME EHSNHLSRNI EDIVQSVRDI ESKRLARIIL YKTFMKLLIS YLIKLVWLFL 240 FLLIFKPILI RSCTARWLAH SRCIWME* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G055700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631537.1 | 1e-156 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
TrEMBL | A0A2C9UPD2 | 0.0 | A0A2C9UPD2_MANES; Uncharacterized protein | ||||
STRING | XP_002527271.1 | 1e-140 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-96 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G055700.1.p |