PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G023700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 404aa    MW: 43710 Da    PI: 6.9267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G023700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-1857106255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a+++a+++++g
  Manes.13G023700.1.p  57 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDRAARAMRG 106
                          59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-2157114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-2957113IPR001471AP2/ERF domain
PROSITE profilePS5103222.14257114IPR001471AP2/ERF domain
CDDcd000185.26E-3157113No hitNo description
SMARTSM003802.2E-3357120IPR001471AP2/ERF domain
PfamPF008472.4E-1157106IPR001471AP2/ERF domain
PRINTSPR003672.4E-95869IPR001471AP2/ERF domain
PRINTSPR003672.4E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEEALRRLSG MTHVQESIPD NHKKSTNGAP AVASAAASTA NKRSLKESGG GSGGTMRYRG  60
VRRRPWGRYA AEIRDPQSKE RRWLGTFDTA EEAACAYDRA ARAMRGLKAR TNFVYPTSDP  120
HSSTDHFVPP VGLSSKQAQA SIRDIPSRQC NSNSSNWPSF GNPDVGDFSG SAPQRSNSAS  180
FNMLLLRDFL DPSSGSSLYN HPQALYDQFP HINGSCSSLS NTFPSGKNPS NDSNVSDTFA  240
GSSLSALPMN DDNQSYNSSG GSGKPNSQVD YLEFFPREPS DSGLLQEIIQ GFLPKPASEK  300
IHSSSSSLNC TGESIVAPGP EMSTSYPSLD EFRRSIESEL LVKNENLGVY LGHYHGGSAQ  360
FKSSHGINSH VVPYGHVGLQ EKLHHQMGAD SILQDIFQHP DFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1958113359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-1945113171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G023700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633693.10.0ethylene-responsive transcription factor ESR2-like
TrEMBLA0A2C9UNF50.0A0A2C9UNF5_MANES; Uncharacterized protein
STRINGcassava4.1_026470m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-21DORNROSCHEN-like