PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G119700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 362aa    MW: 39988.1 Da    PI: 7.1675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G119700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12185231455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A+ Y+k+Lq
  Manes.12G119700.1.p 185 EHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAISYVKQLQ 231
                          6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.612181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17185247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17185242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-10185231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-11186235No hitNo description
SMARTSM003532.8E-14187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDIASARWFT EQDLDDYNLI HEYHIKSLAD QLTTQNMATA PEENLRRSFP SESCSSYPPL  60
SSSSIETCQT GSERPSKLHK TSSFNSSMIT TEHPSPKPST TQVLCFESSL ISAPANSQQC  120
FMNLNSATTF KPKEEAASPR NLRFQPLISK VAPFESQNYE MKASQGASNN KKPYSISRTP  180
SHAQEHILAE RKRREKLSQR FIALSAIVPG LKKMDKASVL GDAISYVKQL QERVKVLEEQ  240
TKTRTVESVV LVKKSQLSAD DDSSSSEENS DGSSDSALPA IEARVSDKDV LIRIHCDKQR  300
GVVPKILNDV ENLNLSIINS SVLPFGDSTL DITIVAQMEA EFSKAAKDLV KNLRVAFLKL  360
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14186234957Transcription factor MYC2
5gnj_B1e-14186234957Transcription factor MYC2
5gnj_E1e-14186234957Transcription factor MYC2
5gnj_F1e-14186234957Transcription factor MYC2
5gnj_G1e-14186234957Transcription factor MYC2
5gnj_I1e-14186234957Transcription factor MYC2
5gnj_M1e-14186234957Transcription factor MYC2
5gnj_N1e-14186234957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G119700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630182.10.0transcription factor bHLH18-like
TrEMBLA0A2C9UVT40.0A0A2C9UVT4_MANES; Uncharacterized protein
STRINGcassava4.1_011821m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-64bHLH family protein