PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G090500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 294aa MW: 33038.1 Da PI: 9.1586

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G090500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.4	4.1e-34	60	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 lp+G++F+Ptd+el+ e+L+ +v++++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ Manes.12G090500.1.p 60 LPAGVKFDPTDQELL-EHLEGQVKSDSrkihplI---DefipTIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvh 144 799**********.99**9995665442...133333665557******.555666688**************745 PP NAM 78 ..tk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 t+ + +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Manes.12G090500.1.p 145 tdTEggETRWHKTGKTRPVFV-SGKLKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200 553344667********.999*******6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-38	53	219	IPR003441	NAC domain
PROSITE profile	PS51005	33.748	60	219	IPR003441	NAC domain
Pfam	PF02365	2.9E-15	61	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTWCNDCNDV QTIERSSPVP STTSSNIAQR HKDSLLRSCP SCGHQIKCQD QARIHDLPGL 60 PAGVKFDPTD QELLEHLEGQ VKSDSRKIHP LIDEFIPTIE GENGICYTHP EKLPGVSKDG 120 LVRHFFHRPS KAYTTGTRKR RKVHTDTEGG ETRWHKTGKT RPVFVSGKLK GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GNNEEEKEGE LVVSKVFYQT QPRQCGSSMK DSFTSKLKGQ 240 SGHEGANSLK NSSVVEYYSP FISFDQGSHT RGNPPPPQLL QHFAVHDGSS FIP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G090500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605185	0.0	KR605185.1 Manihot esculenta NAC transcription factors 47 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630158.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-132	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0M3R858	0.0	A0A0M3R858_MANES; NAC transcription factors 47
STRING	cassava4.1_022415m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-122	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Manes.12G090500.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508] Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]