PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G062100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 491aa    MW: 53363.9 Da    PI: 5.8896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G062100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30108165260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++ers+ d+++ +i+Y g+H+h+k
  Manes.12G062100.1.p 108 EDGYHWRKYGQKLVKGNEFVRSYYKCTHPSCQVKKQLERSQ-DGQIADIIYLGQHDHPK 165
                          7****************************************.***************85 PP
2WRKY104.17.6e-33276334159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK vkg+++prsYYrC+s+gC+vkk+ver+++dpkvv++ Yeg+H+h+
  Manes.12G062100.1.p 276 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCRVKKHVERASHDPKVVITSYEGQHDHD 334
                          58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2699166IPR003657WRKY domain
SuperFamilySSF1182903.53E-24101166IPR003657WRKY domain
PROSITE profilePS5081122.389102166IPR003657WRKY domain
SMARTSM007742.2E-32107165IPR003657WRKY domain
PfamPF031065.3E-23108164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-35262336IPR003657WRKY domain
SuperFamilySSF1182901.31E-28268336IPR003657WRKY domain
PROSITE profilePS5081135.485271336IPR003657WRKY domain
SMARTSM007743.1E-37276335IPR003657WRKY domain
PfamPF031061.7E-25277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVSSREGTDE FASDELQKSQ GPDDGSNVIQ QIDDSGVCTS QNEEVTPVTP EKSLQDTNPG  60
AHISQVDKEE SISSTILHKV SHTPGISSSS LQSSGQEGRT IVREKVSEDG YHWRKYGQKL  120
VKGNEFVRSY YKCTHPSCQV KKQLERSQDG QIADIIYLGQ HDHPKPEHNL PLVTGFVLSV  180
AEERGDVPSS TGTEEDHVPH PLKATSSSQI SVGTTNEHVK NALSESDKIK DEVDSDDDPH  240
SKRQKKGNHN VEPTAVDKPT NEPRVVIQTL SEVHIVNDGY RWRKYGQKLV KGNPNPRSYY  300
RCSSPGCRVK KHVERASHDP KVVITSYEGQ HDHDIPPSRT VTHNATGPST YTTTIRSGES  360
GVKSGGSDMI VHNSSDPSGN SEEHLNTESR CRNDASGTDM VIHSGSGDDS KSNELMNDKP  420
VAPGGSDAAI IDVVVDASSV SGCRSNDQHD CDSRNESKVN CAAYSAHTIN PGSETNPNEQ  480
HRPNAEPVQS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-34106337275WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G062100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276400.0KT827640.1 Manihot esculenta WRKY transcription factor 65 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630676.10.0WRKY transcription factor 1
RefseqXP_021630677.10.0WRKY transcription factor 1
TrEMBLA0A251K3N90.0A0A251K3N9_MANES; Uncharacterized protein
STRINGcassava4.1_009560m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-86zinc-dependent activator protein-1