PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G028000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 394aa MW: 44195.2 Da PI: 9.0678

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G028000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.2e-14	209	255	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ Er+RR+r+++++++Lr l+Pk + K++Ka+iL A++YI +Lq Manes.12G028000.1.p 209 KNLVTERNRRNRMKDGLFTLRALVPKiS------KMNKAAILGDAIDYIGELQ 255 55678*******************66......**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.2E-7	3	70	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	9.03E-17	204	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.053	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-17	207	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.99E-12	207	259	No hit	No description
Pfam	PF00010	9.1E-12	208	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-14	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MPLYSGIHGE VVTSTQSKWI THANASDSNL SPELIGTRVL IPVFGGLIEL FAGQHIAKDQ 60 KIIEFITAHF NVLKQEASIA HDYASINELY LDSFPEHNLQ NLQPPSHLSS LIPPIHIHHP 120 LNQPNNHSSF EGSSSVSNPS NEHSSFDSHS GGYLSRKGIL KQSIGKPYGK RKSGYDEDLL 180 KQQAGLIPES NNEVAKVIQR SERDHFRSKN LVTERNRRNR MKDGLFTLRA LVPKISKMNK 240 AAILGDAIDY IGELQNEEKK LQDELKEIEE QECKNSTEKI ITSRLESLRE DSKYLPPTEK 300 NQYSSGFGDK KKTEVQIELN QIGKREFLIK LFYEHKRGGF GKLMDAIHSL GLQVVDANMT 360 TFNGKVLNIL KVEATVKDIQ PRKLKESLLK LGG*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MPLYSGIHGE VVTSTQSKWI THANASDSNL SPELIGTRVL IPVFGGLIEL FAGQHIAKDQ  60
KIIEFITAHF NVLKQEASIA HDYASINELY LDSFPEHNLQ NLQPPSHLSS LIPPIHIHHP  120
LNQPNNHSSF EGSSSVSNPS NEHSSFDSHS GGYLSRKGIL KQSIGKPYGK RKSGYDEDLL  180
KQQAGLIPES NNEVAKVIQR SERDHFRSKN LVTERNRRNR MKDGLFTLRA LVPKISKMNK  240
AAILGDAIDY IGELQNEEKK LQDELKEIEE QECKNSTEKI ITSRLESLRE DSKYLPPTEK  300
NQYSSGFGDK KKTEVQIELN QIGKREFLIK LFYEHKRGGF GKLMDAIHSL GLQVVDANMT  360
TFNGKVLNIL KVEATVKDIQ PRKLKESLLK LGG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G028000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630715.1	0.0	transcription factor bHLH90
TrEMBL	A0A2C9UU66	0.0	A0A2C9UU66_MANES; Uncharacterized protein
STRING	cassava4.1_031741m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12265	30	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	9e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.12G028000.1.p