PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G017600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 402aa    MW: 45606.4 Da    PI: 5.2337
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G017600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.91.1e-23199252155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ eLH++F++av+q+ G ++A P++il+lm+v+ Lt+e+v+SHLQkYRl
  Manes.12G017600.1.p 199 KARVVWSVELHQKFIKAVNQI-GFHEAGPRKILDLMNVPWLTREKVASHLQKYRL 252
                          68*******************.9999****************************8 PP
2Response_reg83.18.7e-28191271109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p  +++l+++l+k  y ev++++ ++eal+ll+ek+  +D+++ D++mp+mdG+ell     e  +lp+i+++  g+ + + +
  Manes.12G017600.1.p  19 VLVVDDDPMWLKILEKMLKKCSY-EVTTCALAREALHLLQEKKggYDIVISDVNMPDMDGFELLADVGLEM-DLPVIMMSVDGATSRVMK 106
                          89*********************.*******************************************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +++Ga d+l Kp+ ++e+ +
  Manes.12G017600.1.p 107 GVQLGACDYLLKPIRMKEIQN 127
                          ***************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.9E-4316140No hitNo description
SuperFamilySSF521721.71E-3516147IPR011006CheY-like superfamily
SMARTSM004486.2E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.25818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.5E-2519127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.16E-3020132No hitNo description
Gene3DG3DSA:1.10.10.605.1E-26197256IPR009057Homeodomain-like
SuperFamilySSF466896.27E-16197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-20199252IPR006447Myb domain, plants
PfamPF002492.8E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDNGFSFQRY DAFRAGLRVL VVDDDPMWLK ILEKMLKKCS YEVTTCALAR EALHLLQEKK  60
GGYDIVISDV NMPDMDGFEL LADVGLEMDL PVIMMSVDGA TSRVMKGVQL GACDYLLKPI  120
RMKEIQNIWQ HVVRKRIYEP RDIEILEGME TMQMTTNGSD QSDDGHLPCG EDPTSARKRK  180
DVESKHDDED PRDTSPTKKA RVVWSVELHQ KFIKAVNQIG FHEAGPRKIL DLMNVPWLTR  240
EKVASHLQKY RLYLSRLDRV KDLRTCVGGI YYPESPALDS TASAETQYSC NMWHKGVSNA  300
SCGFSGDSLS LYYLDPRSYG KSYVSDEEET VSVPVIASKR SLTTYNSNTW KSRSSEPEFS  360
SPSSESEVNF AVFDSTFLFA YSRDDDKNHR NDDEQTSSKN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17198257463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G017600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629318.10.0two-component response regulator ARR11-like isoform X3
SwissprotQ5N6V81e-115ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2C9USR20.0A0A2C9USR2_MANES; Uncharacterized protein
STRINGcassava4.1_030583m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-114response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]