PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G017500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 512aa    MW: 57398.5 Da    PI: 5.0928
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G017500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.32e-24128181155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Manes.12G017500.1.p 128 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 181
                          68*******************.9*******************************8 PP
2Response_reg326.3e-1215653109
                          CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Manes.12G017500.1.p   1 MPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 
                          9************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001563.20E-12162No hitNo description
PROSITE profilePS5011023.653162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.2E-20189No hitNo description
PfamPF000727.1E-9157IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.7E-15173IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.606.5E-28126186IPR009057Homeodomain-like
SuperFamilySSF466893.58E-17126185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-21128181IPR006447Myb domain, plants
PfamPF002491.5E-7130180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VFRKKIHEVR DIEILEGMET MQMARNGLDV SDDGYLLCGE DLTSVRKRKD FESKHDDKDP  120
ADNSSTKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE NVASHLQKYR  180
LYLSRLQRED TVSAGGIKHS DPPLRDSASS FGAQNSISMQ QLDVASRSYG FLGNSLLVQN  240
GESRGHENER KGTVSKSAAE PKGALNVEVP DPRKSRSSQM EFGRSFTSLG SEVNFAEFDS  300
NFPTRFSWCE SELKQEPQAL HLDDGLRQLT LPGKQQRIQA DYPQPAPPII SGSSATERDI  360
GSVKIKPLYD ECRSNASQVS SIGSTIETSD VQNKTYPVNH QAFDPISTST SSMKNQHFNL  420
SCMSDLESTQ KSVNSELSPY ATLDDDFQVC WVQGDCYAMN LGLQNIEFPE FCDPGLIAGV  480
PTYLYDSVRF DYDNLYDPTE YSLIEQGLFI A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18124186163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G017500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021667473.10.0two-component response regulator ARR11-like
RefseqXP_021667474.10.0two-component response regulator ARR11-like
TrEMBLA0A2C9USV90.0A0A2C9USV9_MANES; Uncharacterized protein
STRINGcassava4.1_005813m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.18e-97response regulator 11