PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G165300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | E2F/DP | ||||||||
Protein Properties | Length: 436aa MW: 48748.7 Da PI: 5.0824 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.7 | 1.7e-27 | 143 | 208 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg Manes.11G165300.1.p 143 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 208 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.5E-29 | 141 | 210 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.72E-17 | 143 | 206 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.2E-35 | 143 | 208 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-24 | 145 | 208 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 4.78E-47 | 219 | 326 | No hit | No description |
SuperFamily | SSF144074 | 1.7E-33 | 220 | 326 | No hit | No description |
Pfam | PF16421 | 3.1E-33 | 224 | 324 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MSNSQPPNSS TRLPQQNVTQ NPLKRQLPFS SMKPPFSAPG DYHRFSSEPR RVADHDVEAI 60 VVKPPPFKRK SDAADHEAES SEWNTSTGFT EVVNSPLQTP VSGKGGKAPK TSRLSKSSKS 120 GPQNAASHLG SPGSNLTLTG PCRYDSSLGL LTKKFINLIK HAEDGILDLN KAADTLEVQK 180 RRIYDITNVL EGIGLIEKKL KNRIQWKGLD VSRPGEADEN VSSLQAEVEN LNIEEHRLDD 240 RIREVQERLR DLSEEETNQK WLFVTEEDIK SLPCFQNETL IAIKAPHGTT LEVPDPDEQA 300 VDYPQRRYRI VLRSTMGPID VYLVSQFEEK FEEIHGVEPP KSYPSTSGFN ENLATTMVPG 360 ESREKEIEML GQDDHRMCSD LNTSQDFVSG IMKIVPTDVD SDADYWLLSD AGVSITDMWR 420 TERILLKVLH SVCLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-26 | 141 | 209 | 5 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G165300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628242.1 | 0.0 | transcription factor E2FB-like isoform X1 | ||||
Swissprot | Q9FV71 | 1e-163 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | A0A2C9V3I8 | 0.0 | A0A2C9V3I8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007936m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1947 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 1e-165 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G165300.1.p |
Publications ? help Back to Top | |||
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