PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G129300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 140aa    MW: 15373.8 Da    PI: 8.4756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G129300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-0533721054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Manes.11G129300.1.p 33 KERKEKLGERILALQQLVSPY-----GKTDTASVLLEAMEYIRFL 72
                         6788889999999*****999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.3E-102281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.9352372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-122984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-42978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-53377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MMENKRSPCS VDQASLTSLA SKRHKADLSI SSKERKEKLG ERILALQQLV SPYGKTDTAS  60
VLLEAMEYIR FLHEQVKVLS APYLQSIPAA ELQEIEEYSL RSRGLCIVPI SCTVGVAHSN  120
GADLWAPIKT TSPKFEKAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G129300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629184.12e-98transcription factor bHLH153 isoform X1
SwissprotQ7XJU22e-66BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2C9V2104e-97A0A2C9V210_MANES; Uncharacterized protein
STRINGcassava4.1_018752m6e-98(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.58e-69bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]