PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G087900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | DBB | ||||||||
Protein Properties | Length: 219aa MW: 24295.8 Da PI: 5.6536 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.2e-07 | 3 | 35 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 +C+ ++ e++ fC ++ lC+ C + H+ Manes.11G087900.1.p 3 IRCDACDMIEASVFCSADEAALCDACDHHVHNA 35 58******88*******************9965 PP | |||||||
2 | zf-B_box | 27.7 | 5.4e-09 | 54 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 + + C+ ++e ++ lfC++++ lC++C l +Hk H Manes.11G087900.1.p 54 QSPLCDICQERRAFLFCQEDRAILCRECDLPIHKAneH 91 6789*****************************87773 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.684 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.18E-4 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 1.7E-5 | 3 | 42 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-4 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.182 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-7 | 54 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.99E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKIRCDACDM IEASVFCSAD EAALCDACDH HVHNANKLAS KHLRFSLLHP SFTQSPLCDI 60 CQERRAFLFC QEDRAILCRE CDLPIHKANE HAENHNRFLL TGVELSTSSL YPTTSSSNSC 120 NTNSNTNRQS PQQPYPQHPG SFSDKIFDTP SVERASPSVP NNYSQSSDNI SVSTSSISEY 180 LETLPGWRVD DFLDPSIAAH DGSSKDVIVE TREHHHLC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G087900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021626946.1 | 1e-151 | B-box zinc finger protein 20-like | ||||
Swissprot | Q0IGM7 | 1e-63 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 3e-63 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2C9UZN2 | 1e-159 | A0A2C9UZN2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026333m | 1e-160 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 4e-60 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G087900.1.p |