PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.11G084700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1130aa MW: 123376 Da PI: 4.4479 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.7e-10 | 985 | 1026 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k Manes.11G084700.1.p 985 RWSKQDTELFYEGIRQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 1026 9*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.7E-28 | 976 | 1060 | No hit | No description |
PROSITE profile | PS51293 | 9.846 | 981 | 1029 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-7 | 982 | 1030 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 983 | 1026 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.61E-10 | 985 | 1032 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-6 | 985 | 1026 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1130 aa Download sequence Send to blast |
MDSDLDSFDD ILLEPAVAHA ARAAGKFQPR AKPRARKITS TSLPSVLPSN TREKSDSSFP 60 TTLDTTKPVQ SVNPLDDRLI SPVDSSLVLP SIVLGSEELL ENNKNNLKCE PLNSSTQTVG 120 RREDLASPDS LPSEFVVTDS SNNGYSNFLF IEAGSSRLDL DPVDVVVPDT TSSKDVTGNG 180 SKVPVSLSMT TLDVAGEPWK DNDRLSPHEK GSSVTSNLSP ARAENAGSVA ASLDGNGELN 240 SSLLKSVEDV DSLGFDLDQP DIMFPECHAS DSRAGKKFQP KVRSHRRKEI SGSSMEQPAT 300 VAAVNSHTTQ PVESVLTMDK PVDPVCPSSP NLDNESNEPS KENEVLLPHD NNLELVSPSS 360 KEFMPKGDMS SKEAYLAGLD SNFGQKPSGV ADSPIEVNSL GLDLDPFADI VLPPAISNAR 420 AGGKFQPRGK ARPRKVTSES NSFAVSGATV EGPASVVSTV SDNLQSAKFI DVGDGRLMDS 480 VYSTLTTMKS MESKEALRND DCTNSGVLLF KVDRSSGLEN SSHLVASDAL HIGDIDRDPH 540 SGLGKSIGEN ADIFSGLEYI HDFVTQSPRT EIPLPASSDG TEEHSRFPAQ ISVNSSAPGA 600 CNEATENVVT CNEAAVEIDN GKPQSDFQEP GSFPDFESPG ILSESAIALE CCTRNTQPKS 660 MVQNGKEIPS TSILPDASPP NTQIDPSESV YIDVGSIPTF PSEDVLDYSS ISFGNFIPAD 720 PTRSEFPVNE ERTNLAETSC SSDLNILHHE DVSTVPAKES SKDRKRKSSS ASYLAQNESV 780 KSARQLRKRT IASQVVDGPE DEAQDSDGFP SEHRNSSIAD GDIDYDYRVD EDNDNEDKVE 840 NTSSSRRASK KSKKPMAEQE KKPVSRRKRK NDAPEQPNQQ SRKKFSHSTR RKSRLKDLLS 900 IPEDEIDYQK MPFKDIILLA GYKEDLAIKE AKASKNSTKK SSTNSLHGEE EDDTVTSEQD 960 GGVADDQSNS LFNCHSFMDK TPTARWSKQD TELFYEGIRQ FGTDLSMIQQ LFPGRTRHQI 1020 KLKYKKEERQ HPLRLSEALS NRAKDHSYFE KVMEQLQQVA AQEERESNRG NSVSLTDDEE 1080 AQLNPETNEE VAKSDEQDED VTVDQDGDPL KYDEDDDDFD IWGSYKSEY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.11G084700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628026.1 | 0.0 | uncharacterized protein LOC110626433 | ||||
TrEMBL | A0A2C9UZN3 | 0.0 | A0A2C9UZN3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_000789m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39160.1 | 9e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.11G084700.1.p |