PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G020200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GRF | ||||||||
Protein Properties | Length: 345aa MW: 38540.8 Da PI: 9.0774 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.9 | 4.9e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e Manes.11G020200.1.p 77 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGRNRSRKPVE 120 79***************************************986 PP | |||||||
2 | QLQ | 62.5 | 1.1e-21 | 11 | 46 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FT++Q+q+L++Q+l+yKy+++++P+PpeL+ ++ Manes.11G020200.1.p 11 SPFTPTQWQELEHQALIYKYMVSGVPIPPELIYSVK 46 89*****************************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.3E-13 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.949 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.1E-16 | 12 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.241 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-21 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MMNAPNTRNR SPFTPTQWQE LEHQALIYKY MVSGVPIPPE LIYSVKRSLE SSLASRLFPH 60 QPVGWGCFQV GFGRKADPEP GRCRRTDGKK WRCSKEAFPD SKYCERHMHR GRNRSRKPVE 120 LASTATSTTA TATVTNPLPS INRNLSTPTS PFASSYSFSP LSSTMEPEIP VYQNPSQSSI 180 LNPFLYSHSS SSSRPPGSGF SPQNSATHNL FLDAGSSSHA DKDYRYFHGM REVVDERAFF 240 PEASAGSARS SQDPYQQLAM SSYKGYSQLQ FQRLADTSKQ QEEDQQHCFV LGTDFKSSST 300 RPIKLEREGE TQKPLHHFFG EWPPKSTDSW LDLAPSSGLH TAGN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.11G020200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235913 | 5e-51 | AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence. | |||
GenBank | AM468035 | 5e-51 | AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628977.1 | 0.0 | growth-regulating factor 5-like | ||||
Swissprot | Q8L8A6 | 4e-73 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A2C9UXK6 | 0.0 | A0A2C9UXK6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025653m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-67 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G020200.1.p |