PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.10G044400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB_related

Protein Properties

Length: 1704aa MW: 186279 Da PI: 6.147

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.10G044400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.1	6.3e-11	1008	1047	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++tI+r++ +R++ qck ++ Manes.10G044400.1.p 1008 WTDEEKSIFIRAVSSYGKD-FATISRCVR-TRSRDQCKVFFS 1047 ***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-12	778	838	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.798	790	841	IPR017884	SANT domain
SMART	SM00717	6.7E-6	791	839	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-4	794	840	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.442	1003	1054	IPR017884	SANT domain
SMART	SM00717	5.9E-9	1004	1052	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-10	1006	1054	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-6	1007	1048	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	1008	1047	IPR001005	SANT/Myb domain
CDD	cd00167	1.41E-7	1008	1046	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1704 aa Download sequence Send to blast
MPPERLPGDR KDFCKERKPR WRESSSSHYG SSRDFPRWGG SNEFRRPPGH GKQGGWHLFA 60 EESGHGYAPF RSSDRILEEK NFRTSVSRGD GKYARNGRDN RGSFSQRDWR ANSWELNNGS 120 LNMPGRLHDA RNDQKSVDDT VTYPSSHPRT EFLTSWDPLH SKDLHDNSKM VVGNGMGTGQ 180 RGDRENLDWK PLNKWTRSGS LSSRGSGFSH SSSSKSLGGA DSYEGKAELQ LKNASLVQSP 240 SGDAAACVTS APSDEMAARK KPRLNWGEGL AKYEKKKVES PEVNLSKDGV VISSNNIEPI 300 HSQITTLVEK SPRVMGLSDC ASPATPSSVA CSSPGVEEKI SGKEVTGDND VSNLCGSPSI 360 GSQSNIEGLS FNLEVLDATS VANLGAVLVE LLQSDDSSSV DSSFIRSTAM NKLLILKGGI 420 SKALEVTESE IDLLENELKS LKFVSGSRYP CLEASSFLPA GDEVKLCNEQ GAASDIPRPS 480 PLQVSSCGPG DLEKIPICSG GLEEVHGGSK GDDVDSSGNA TSKFVESMST VKAVSSSDLV 540 KHGECSGDVG GIETTNLVFK SVVPCTSDQG DVPACGDVDV NFLTECKGGD SFPNDASFAE 600 DNLCNLILAA NRESASKACK VFSTLLPRDD CKIDFPEVAN VAFRHNDVLV KEKFARRKQF 660 LKFKERVVTL KFKAFQHLWK EDMRLLSIRK FRAKSQKKYE SMRITHSGYQ KNRSSVRSRF 720 SSLVGNLSLI PTTEMLNFTS RLLSVSQVKL YRNALKMPAL SLDNKERTVS RFISSNGLVE 780 DPCAIEKERA MINPWSSEER GVFIDKLATF GKDFRKIASF LDHKTTADCV EFYYKNHKSD 840 CFEKTKKRKQ SKSSTNYLMA SGKHWNREMN AASLDILGAA SLIAADADNG MANQQMCSGR 900 YYLGGYCNSK PSHGDDGNLD RSSNLDILEN ERETVAADVL AGICGSMSSE AMSSCITTSV 960 DPGDGCREWK SQKVDSVRKR PSTSDVTENV DEETCSDESC GEMDPADWTD EEKSIFIRAV 1020 SSYGKDFATI SRCVRTRSRD QCKVFFSKAR KCLGLDSIHP GSGNLGTPLS DDANGGGSDA 1080 EGGAFEYGSV NCSSKLGSKM DDNLPLPVMD PKCEVSDDVE RIILTTDLNR SKDNNVSVEL 1140 VQNDMKVEKT FVSDSCQMEH KPVQAIDIDN KIMDGSVCQS ELMKAQEISN GSVSLEAGME 1200 KPIEDNISVG DTVDPVPSNP VGDVKTVVEA SANGSVNHFK AEELLPLENS LNDQSGLIRD 1260 SNASTDVSHQ SLDMGSCSKF SLAMENMQHA SMEIKSMDKY RIAAIPFRKM DNHDTLLSQF 1320 DIQESRDEQG KKLVGQDNDL QHLPGQRLVS CSESSQIIAG YPLPIPTKIE MNGDVSCGPP 1380 EVQSLPMADR SAANQFVGQD CYLRKCNNVK DECSVPELPL VSQHTDIGND HPRDHSRSSS 1440 NVEKPCRNGD VKLFGKILTN SSCAQKSNPS INENVEQGTH CTKPGSKSST LKFTGHQTTD 1500 GSSSVLKFDR NNYLGLENVP MKSYGFWDGN MIQTGFPSIS EYFLAKYPAA FGNYHVSSSK 1560 MEQQALQAAM KCNDRNLTGV SVLPPREISS SKGVVDYQMY RSHDSSKVQP FSVDMKQRQD 1620 IFCEMQRRNG FETISSLQQQ GRGMVGMNVV GRGGVLVGGS CTGVSDPVTA LKMHYSKTEQ 1680 YGGQNGSMMR EEESWRSKGD IGR*

Sequence ? help Back to Top

Protein Sequence Length: 1704 aa Download sequence Send to blast

MPPERLPGDR KDFCKERKPR WRESSSSHYG SSRDFPRWGG SNEFRRPPGH GKQGGWHLFA  60
EESGHGYAPF RSSDRILEEK NFRTSVSRGD GKYARNGRDN RGSFSQRDWR ANSWELNNGS  120
LNMPGRLHDA RNDQKSVDDT VTYPSSHPRT EFLTSWDPLH SKDLHDNSKM VVGNGMGTGQ  180
RGDRENLDWK PLNKWTRSGS LSSRGSGFSH SSSSKSLGGA DSYEGKAELQ LKNASLVQSP  240
SGDAAACVTS APSDEMAARK KPRLNWGEGL AKYEKKKVES PEVNLSKDGV VISSNNIEPI  300
HSQITTLVEK SPRVMGLSDC ASPATPSSVA CSSPGVEEKI SGKEVTGDND VSNLCGSPSI  360
GSQSNIEGLS FNLEVLDATS VANLGAVLVE LLQSDDSSSV DSSFIRSTAM NKLLILKGGI  420
SKALEVTESE IDLLENELKS LKFVSGSRYP CLEASSFLPA GDEVKLCNEQ GAASDIPRPS  480
PLQVSSCGPG DLEKIPICSG GLEEVHGGSK GDDVDSSGNA TSKFVESMST VKAVSSSDLV  540
KHGECSGDVG GIETTNLVFK SVVPCTSDQG DVPACGDVDV NFLTECKGGD SFPNDASFAE  600
DNLCNLILAA NRESASKACK VFSTLLPRDD CKIDFPEVAN VAFRHNDVLV KEKFARRKQF  660
LKFKERVVTL KFKAFQHLWK EDMRLLSIRK FRAKSQKKYE SMRITHSGYQ KNRSSVRSRF  720
SSLVGNLSLI PTTEMLNFTS RLLSVSQVKL YRNALKMPAL SLDNKERTVS RFISSNGLVE  780
DPCAIEKERA MINPWSSEER GVFIDKLATF GKDFRKIASF LDHKTTADCV EFYYKNHKSD  840
CFEKTKKRKQ SKSSTNYLMA SGKHWNREMN AASLDILGAA SLIAADADNG MANQQMCSGR  900
YYLGGYCNSK PSHGDDGNLD RSSNLDILEN ERETVAADVL AGICGSMSSE AMSSCITTSV  960
DPGDGCREWK SQKVDSVRKR PSTSDVTENV DEETCSDESC GEMDPADWTD EEKSIFIRAV  1020
SSYGKDFATI SRCVRTRSRD QCKVFFSKAR KCLGLDSIHP GSGNLGTPLS DDANGGGSDA  1080
EGGAFEYGSV NCSSKLGSKM DDNLPLPVMD PKCEVSDDVE RIILTTDLNR SKDNNVSVEL  1140
VQNDMKVEKT FVSDSCQMEH KPVQAIDIDN KIMDGSVCQS ELMKAQEISN GSVSLEAGME  1200
KPIEDNISVG DTVDPVPSNP VGDVKTVVEA SANGSVNHFK AEELLPLENS LNDQSGLIRD  1260
SNASTDVSHQ SLDMGSCSKF SLAMENMQHA SMEIKSMDKY RIAAIPFRKM DNHDTLLSQF  1320
DIQESRDEQG KKLVGQDNDL QHLPGQRLVS CSESSQIIAG YPLPIPTKIE MNGDVSCGPP  1380
EVQSLPMADR SAANQFVGQD CYLRKCNNVK DECSVPELPL VSQHTDIGND HPRDHSRSSS  1440
NVEKPCRNGD VKLFGKILTN SSCAQKSNPS INENVEQGTH CTKPGSKSST LKFTGHQTTD  1500
GSSSVLKFDR NNYLGLENVP MKSYGFWDGN MIQTGFPSIS EYFLAKYPAA FGNYHVSSSK  1560
MEQQALQAAM KCNDRNLTGV SVLPPREISS SKGVVDYQMY RSHDSSKVQP FSVDMKQRQD  1620
IFCEMQRRNG FETISSLQQQ GRGMVGMNVV GRGGVLVGGS CTGVSDPVTA LKMHYSKTEQ  1680
YGGQNGSMMR EEESWRSKGD IGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.10G044400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625727.1	0.0	uncharacterized protein LOC110624751
TrEMBL	A0A2C9V384	0.0	A0A2C9V384_MANES; Uncharacterized protein
STRING	cassava4.1_030376m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Link Out ? help Back to Top
Phytozome	Manes.10G044400.1.p