PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G139000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 1018aa MW: 114640 Da PI: 5.0429 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Manes.08G139000.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Manes.08G139000.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.48E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.4E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 8.99E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.80E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.1E-59 | 406 | 656 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1018 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPKFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLA GNEELTEGNG ATRALLANYA QTPQQGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KREIQTPNPM LTPSATPGGV 420 GLTPRIGMTP SRDGYSFGMT PKGTPIRDEL HINEDMDLHD SAKLEQRRQA DIRRNLRSGL 480 STLPQPKNEY QIVIQPPPED HEEPEEKIEE DMSDRIARER AEEEARQEAL LRKRSKVLQR 540 ELPRPPAASL ELIRNSLLRA DEDKSSFVPP TSIELADEMI RKELLLLLEH DNAKYPLDEK 600 QNKEKKKGAK QAANRSAMFV PVIEDFEEDE LKEADKLIEE EVQYICVAMG HESESVDVFV 660 DAHRTCLSDL MYFPTRNAYG LSSVAGNVEK LAALQNEFEN VKARLEAERE KALRLEKKVN 720 VLTQGYQTRS ERQLLPPIES ILKQMDTAGT ELECFQALQK QEQLAATHRI NGLWEEVQKQ 780 KELEQTLQRR FGNLVAELER IQHLIADYRT LAKQQEEIAA RNCALELAES AAKQAAMQNS 840 ETSEPMPSDD VGSSAPVDSS KLEISEQQIN AAQEHMHASL KQEGTNADSQ NKHAPMDTDA 900 SLSTDVPSVV EELHAARVPK ADENNKDGVP ANYLINQGDD ISDVVVVEGN KLKEESVNVN 960 ASDIKISTDV IRDDAVAEDQ QILMEITKPD GVVTKGGLGE DERSKSTYDE VNAVSSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 802 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G139000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034635 | 0.0 | KM034635.1 Jatropha curcas clone JcMYB014 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620845.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A2C9VG61 | 0.0 | A0A2C9VG61_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_000846m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G139000.1.p |
Publications ? help Back to Top | |||
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