PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.08G107100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 735aa MW: 78274.2 Da PI: 6.331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.6 | 3.3e-16 | 465 | 511 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Manes.08G107100.1.p 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.61E-17 | 457 | 515 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-20 | 458 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-20 | 458 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 461 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 465 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 467 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MPLSELVYRL AKGKLDSSQE KNPTCSTDLS SGPENDFVEL VWENGQIQSN RTRKIQFSSG 60 FPSQTSRIQD KDIDNGSNTK VGRFGVMDSV IGEVPMSVPS VVMGLNQDDD MVPWFNYRIE 120 DTLEHDPELF NELSGVTANE QPHNHYTSME KRSCGNQSVR DSRSAPGHNG LSSEQGHITK 180 VSSVGDVDAN RPRNGSSQLY PSPSQQCQTS FPCFRSRGSA NSGESTNNLS RHATSRDSMR 240 VPPSGGGLPS IKVQNQVPVS STTNSSLMNF SHFSRPAAFV KANLHNNGTR AGSGISSIER 300 KVRKDKGSIA NSSNPGECIL IDTFSGSGKE TSFNYNPVLV SSNVDAKQLD PKSGEESLPS 360 KQPEALDRVD SKNDKHHCLI AESATRGFVD GEKTAEPLVV SSSVCSGNSV ERVSDEPTQN 420 LKRKHQETEE SEVPSEDVEE ESVAAKKTTP SRGGGGSKRS RAAEVHNLSE RRRRDRINEK 480 MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPSMML PPGMPHMQAA 540 HMAQFSPVGI GMGMGMGMGF GMGMPDMIGG SSGCSMIPVP PMHGACFRGP SISGPSALHG 600 MGASNLPIFA LSAQGHPMSY PCAPLLPISG GPLLKTSIGL NVGGVAGPLD NLDSAPGCFS 660 KDSIQNISSQ AIKNCGANSS MNQTSGQCQM TNENFEQPSL LQHSGQSSEV ADRGALNSAN 720 GNDNAPSGAT AGCD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 469 | 474 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.08G107100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021620739.1 | 0.0 | transcription factor PIF3-like isoform X1 | ||||
TrEMBL | A0A2C9VF99 | 0.0 | A0A2C9VF99_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002428m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-64 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Manes.08G107100.1.p |