PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.08G084300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 287aa    MW: 31911.6 Da    PI: 5.1988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.08G084300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31123179258
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++k+s++prsYY+Ct ++C++kk+vers+ed++++++tYeg H h
  Manes.08G084300.1.p 123 DDGYKWRKYGQKSIKNSPYPRSYYKCTNPRCSAKKQVERSREDQDTLVVTYEGLHLH 179
                          8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-29117179IPR003657WRKY domain
PROSITE profilePS5081127.175117182IPR003657WRKY domain
SuperFamilySSF1182901.96E-26119179IPR003657WRKY domain
SMARTSM007741.2E-34122181IPR003657WRKY domain
PfamPF031064.2E-25123179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMEQVKASNW LDESEDELIV RELLDDESPF FLLPNEAAES KPTTNHYSND QTISRLVSTV  60
YSGPTIQDID HALSFTSSST IQRDQVQAAS QACRISILEK GVSRIENNKY TLKLKTCGNG  120
MADDGYKWRK YGQKSIKNSP YPRSYYKCTN PRCSAKKQVE RSREDQDTLV VTYEGLHLHF  180
AYPCFLLEQP NLVNPPPSKK PKKAAATQET AEECPPQASP TTGSMEECEC LLDQTQSPQP  240
QSQGLLEDIV PLMIRNPLSS NSSSCSSYPS PPTSPSSLSW SPHSCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-211211791371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.08G084300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276100.0KT827610.1 Manihot esculenta WRKY transcription factor 35 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621767.10.0probable WRKY transcription factor 49
TrEMBLA0A2C9VEJ60.0A0A2C9VEJ6_MANES; Uncharacterized protein
STRINGcassava4.1_032605m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.16e-46WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]