PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G130600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 674aa MW: 73395.2 Da PI: 7.0692 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.9e-07 | 266 | 286 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Manes.07G130600.1.p 266 PCPEFRK-GACQKGDACEYAHG 286 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.3E-14 | 54 | 179 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.66E-13 | 73 | 151 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.012 | 76 | 106 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.716 | 76 | 151 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 4.6E-9 | 77 | 135 | No hit | No description |
CDD | cd00204 | 1.18E-12 | 78 | 174 | No hit | No description |
SMART | SM00248 | 0.014 | 111 | 143 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.526 | 111 | 146 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 13.037 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-5 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 266 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-5 | 266 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 293 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.15 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 296 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MCSGSKSKPF PSNPTMEVES GSRKDGIFCK CSVLLELSAS DDLVGFKNEI EEKGLDVDEA 60 SYWYGRRIGS KKMGFEERTP IMIAAMFGST NVLKYIIETG KVEVNRACGR DKVTALHCAV 120 AGGSNSLVEI VKLLLDASAD ANCVDASGNK PSDLFTSSLK SPCNSRRKLV ELLLKGESLS 180 GDEEEKLILM SLPTKEGTEK KEYPIDVSLP DINNGIYGTD EFRMYCFKVK PCSRAYSHDW 240 TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGACQKGDA CEYAHGVFES WLHPAQYRTR 300 LCKDETGCSR KVCFFAHKPE ELRPVYASTG SAMPSPKSIS VSSMDMATMS PLSLGSSSLT 360 LPTVSTPPMS PLSAASSTPK SGGLWQNKVN LTPPALQLPG SRLKTALCAR DFDLEMELLG 420 LENHSSQLQQ QQLMDEISGL SSSSCWSKDF NRIGDLKPTN LDDVFGLLDP SLLSPLQGMS 480 LKPSTPTQLQ SPTGVQICQN MNQLRSSYPA NLSSTVRKPA SFGFDSSAAV AAAVMNSRSS 540 AFAKRSHSFI DRGAATNRLG ITAAANSVSM MSSNLSDWSS PDGKLDWGVQ GDELNKLRKS 600 ASFGFRSNNR TTAADLTLSN INEPDVSWVN SLVKDVPPAG FGADKQYNLS KGVREPLQPW 660 MEQLYIEQEQ MVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G130600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617821.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A2C9VL48 | 0.0 | A0A2C9VL48_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003039m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G130600.1.p |