PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G095100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 325aa    MW: 35509 Da    PI: 7.0409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G095100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016141163123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C++ F++   L  H  +H
  Manes.07G095100.1.p 141 YECKTCNRAFPSFQALGGHRASH 163
                          99**********99999998887 PP
2zf-C2H213.20.00027218240123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Manes.07G095100.1.p 218 HECSICGAEFTSGQALGGHMRRH 240
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-12140165IPR007087Zinc finger, C2H2
SuperFamilySSF576676.13E-9140163No hitNo description
SMARTSM003550.13141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596141168IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576676.13E-9213240No hitNo description
SMARTSM003550.01218240IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-12218242IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEAQEEATAT AVVKGKRTKR QRLQSPVPFA NLTAHSSSSE GDGDGDGDVQ FTNGKISTNV  60
SPTTSQEFQD STEEEEDMAN CLILLAQGHS NNNNKQDNNE VAGVYSPTIT AAAATTTSKF  120
NSRRFLETGC PGSGKVGYYV YECKTCNRAF PSFQALGGHR ASHKKPKNDE KKQFAIFSDE  180
EDGHLRDISS LSLQLSNNNS NNNRGMYSSS NQNKNKIHEC SICGAEFTSG QALGGHMRRH  240
RTPIGANSST TLLLPHVGVE SEEPKKARNQ LSLDLDLNLP APEDEIFSIA SKQQKQPKTQ  300
QQQQQQQQKP SLVFSRPALV DCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G095100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618899.10.0zinc finger protein ZAT5-like
TrEMBLA0A2C9VJX80.0A0A2C9VJX8_MANES; Uncharacterized protein
STRINGcassava4.1_027180m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-61C2H2 family protein