PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G051700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24538.3 Da    PI: 10.2607
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G051700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.51.5e-221862549
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         n+sn qvtfskRr g++KKA+EL++LC++eva+i+fs+  k++ +
  Manes.07G051700.1.p 18 NESNLQVTFSKRRSGLFKKASELCTLCGVEVAIIVFSPGKKVFSF 62
                         89************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.848666IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-30665IPR002100Transcription factor, MADS-box
CDDcd002654.73E-31774No hitNo description
SuperFamilySSF554554.97E-26783IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-17828IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241762IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MARKSKGRQK VAMVKMPNES NLQVTFSKRR SGLFKKASEL CTLCGVEVAI IVFSPGKKVF  60
SFGHPGVETV VERFITRSPP QISPTMQLIE AHRNASVREL NLQLTQVCNQ LEMEKKKAEE  120
INQTRKANKS QCWWESPIEE LNMPQLQQLK LSLEQLKKIV ATQADKLLIQ NSQAHLHSQF  180
YASTSSGAVL PFESKNGVFN PEIVPSHGHN LGYGRGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-15789284MEF2 CHIMERA
6bz1_B2e-15789284MEF2 CHIMERA
6bz1_C2e-15789284MEF2 CHIMERA
6bz1_D2e-15789284MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.07G051700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617879.11e-161agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-69AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2C9VIS11e-160A0A2C9VIS1_MANES; Uncharacterized protein
STRINGcassava4.1_031625m1e-161(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-64AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]