PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G021000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16761.4 Da PI: 9.6432 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.2 | 9.2e-11 | 17 | 118 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 ++l+++ l+++ l++p + ++++ + + + sk ++ d++g+ We+ l r++++ v + W Fv + gL++gD+v+F+ Manes.07G021000.1.p 17 SKLLTKTDLEHQ-LIVPSEVLTKYpildQ-NGHVSKYIISFDKNGKPWEFPLATRNTGRYpkpSVPPASWHPFVAEYGLRAGDSVLFYTR 104 455566666665.999*********9962.444567888899**********765555557778888*********************55 PP .SSSEE..EEEEE- CS B3 86 .grsefelvvkvfr 98 ++ + v+ +r Manes.07G021000.1.p 105 lDDPADKIQVRGLR 118 24466666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-10 | 14 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.515 | 14 | 120 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-11 | 14 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.86E-8 | 15 | 118 | No hit | No description |
SMART | SM01019 | 0.0052 | 16 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MKDIIPINDP KTVVLFSKLL TKTDLEHQLI VPSEVLTKYP ILDQNGHVSK YIISFDKNGK 60 PWEFPLATRN TGRYPKPSVP PASWHPFVAE YGLRAGDSVL FYTRLDDPAD KIQVRGLRKT 120 ILFKGEESWV EVEKLHNQRR ACMNLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G021000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021664346.1 | 3e-54 | uncharacterized protein LOC110653034 | ||||
TrEMBL | A0A2C9VJC5 | 1e-104 | A0A2C9VJC5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030218m | 1e-86 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15290 | 3 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 3e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G021000.1.p |