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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.07G003800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 422aa MW: 46807.7 Da PI: 7.5795 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.4e-11 | 349 | 394 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a++L +AveYIk+Lq Manes.07G003800.1.p 349 SIAERVRRTRISERMRKLQDLFPNM----DKQTNTADMLDLAVEYIKDLQ 394 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.462 | 343 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-15 | 346 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.97E-11 | 347 | 398 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 348 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-11 | 349 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-8 | 349 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MSLLYSPSFN YQNGELRRNQ EYMDLNQHHY HQEQHQQNSG LMRYRSAPSS FLQSLVNGTS 60 SHGGDGGGVE GEDYRYFRSS SPEMDTMLAR FMSTCNGSGD SNPQNLQEYG ERPAMKQEIE 120 DSQMVYQSLP INDLTDDGNP VNVGNSVDNT YGVMNSMALE NSMQASKMST LNGSNLVRQN 180 SSPAVFFSNL GVDNGFTVTK DGGSFRACNG LNAEASPSIS RLSNHLNFPS GQRFLPRIAE 240 IGEENPGASS PEGNTGKRQY MNFGNDSWDD SSSNDFKRLR SNDGHVFSGL NMLDNQNGNS 300 GNRSTGLTHH LSLPKTASEM ATIEKFLQFQ GSVPCKIRAK RGCATHPRSI AERVRRTRIS 360 ERMRKLQDLF PNMDKQTNTA DMLDLAVEYI KDLQKQVKNL KDTRAKCTCS SKQKLYLNAS 420 A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.07G003800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618193.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A2C9VHB5 | 0.0 | A0A2C9VHB5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008380m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4005 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 6e-70 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.07G003800.1.p |