PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.07G000300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 562aa MW: 63935.1 Da PI: 6.7077

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.07G000300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.4	1.1e-29	125	210	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Manes.07G000300.1.p 125 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMyEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 210 8***********************************99**************************98..55667*****85 PP
2	trihelix	54.5	3e-17	416	496	2	81
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt+ e+ L+++r++me+r++++ +++lWee+s+km+ g+e+s+ +C+ekw+n ++ kk ke+ ++ ++ +s+ + Manes.07G000300.1.p 416 WTEAETARLMQLRSNMESRFQQSGcmEEEALWEEISAKMAYMGYEKSALMCEEKWKNKEGNNKKRKENTRG-SCYFQSNESI 496 *******************96435889***********************************99886.5766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.946	118	183	IPR017877	Myb-like domain
SMART	SM00717	2.2	122	185	IPR001005	SANT/Myb domain
Pfam	PF13837	3.9E-20	125	211	No hit	No description
CDD	cd12203	1.93E-19	125	190	No hit	No description
PROSITE profile	PS50090	6.632	408	474	IPR017877	Myb-like domain
SMART	SM00717	1.3	412	476	IPR001005	SANT/Myb domain
Pfam	PF13837	4.7E-12	415	486	No hit	No description
CDD	cd12203	2.81E-17	416	481	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MEMEDHNHHN QYNIDLRQFI SGRPIHFPAI PQPSPTELFA AHRSLPPQTR HYDMMMLMPR 60 SGGLHDFHSD STTAACVPPP PPPPPAATAA ANSGNTTVAA TSATPTLSGL EAEIGSFGGD 120 AGTGRWPRQE TLTLLDIRSR LDSKFKEANQ KGPLWDEVSR IMYEEHGYQR SGKKCREKFE 180 NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGETSNPAL VPETQFGGTG LRFHSSNQAN 240 NGIFHSQKLC DSLSLSDSAE FDTSSEENDL STGTLMENGS TEKRRKRRDG KSWKTKIKDF 300 IDSQMRKLIE RQEAWLEKVT KTLEQKEQER TLREEEWRKR EAARIDREQK FWAKERAWIE 360 ARDAALMETL RKLTGREVNA SSAEELIRVY EIQNQRENGI ESGSERAHNS LKCESWTEAE 420 TARLMQLRSN MESRFQQSGC MEEEALWEEI SAKMAYMGYE KSALMCEEKW KNKEGNNKKR 480 KENTRGSCYF QSNESIYNPG GTYCEINEQG PETVRLQANE GSSPANSNAG NTVSESCFRF 540 LMGDGGENLW ENYGLKLSKG D*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MEMEDHNHHN QYNIDLRQFI SGRPIHFPAI PQPSPTELFA AHRSLPPQTR HYDMMMLMPR  60
SGGLHDFHSD STTAACVPPP PPPPPAATAA ANSGNTTVAA TSATPTLSGL EAEIGSFGGD  120
AGTGRWPRQE TLTLLDIRSR LDSKFKEANQ KGPLWDEVSR IMYEEHGYQR SGKKCREKFE  180
NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGETSNPAL VPETQFGGTG LRFHSSNQAN  240
NGIFHSQKLC DSLSLSDSAE FDTSSEENDL STGTLMENGS TEKRRKRRDG KSWKTKIKDF  300
IDSQMRKLIE RQEAWLEKVT KTLEQKEQER TLREEEWRKR EAARIDREQK FWAKERAWIE  360
ARDAALMETL RKLTGREVNA SSAEELIRVY EIQNQRENGI ESGSERAHNS LKCESWTEAE  420
TARLMQLRSN MESRFQQSGC MEEEALWEEI SAKMAYMGYE KSALMCEEKW KNKEGNNKKR  480
KENTRGSCYF QSNESIYNPG GTYCEINEQG PETVRLQANE GSSPANSNAG NTVSESCFRF  540
LMGDGGENLW ENYGLKLSKG D*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.07G000300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184063	8e-45	AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBank	AC214419	8e-45	AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617423.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-139	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2C9VH52	0.0	A0A2C9VH52_MANES; Uncharacterized protein
STRING	cassava4.1_004704m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-122	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.07G000300.1.p

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]