PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.06G130900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 234aa MW: 26624.7 Da PI: 8.525 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.8e-06 | 94 | 109 | 11 | 26 |
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 r+G C++Gd C +aHg Manes.06G130900.1.p 94 RNGKCNRGDACEYAHG 109 78*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.8E-4 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.164 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-5 | 90 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 19 | 119 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLTGINTTNY NSFYDFGDYA FSGRNVHPSS QYDNIHDAIY GSDEFRMYAY KIKRCTRTRS 60 HDWTECPYAH RGEKATRRDP RKVPYVAIAC PGFRNGKCNR GDACEYAHGV FEYWLHPARY 120 RTRACNAGRY CQRKVCFFAH TPDQLRSEKK YACPFVYRAR MNGGDGGFGN GPGSEEGATS 180 SPVRIDGGSC FEGVSELLSS WRNLKIKDEE KKQKKADLEG DLPQLDWISE LVQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.06G130900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614826.1 | 1e-177 | zinc finger CCCH domain-containing protein 54 | ||||
Swissprot | O65036 | 2e-82 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | A0A2C9VQE7 | 1e-175 | A0A2C9VQE7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024397m | 1e-176 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14172 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 9e-79 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.06G130900.1.p |