PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.06G091500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MIKC_MADS

Protein Properties

Length: 359aa MW: 40518.6 Da PI: 6.4352

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.06G091500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.3	9.6e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tg+ Manes.06G091500.1.p 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIVLLLFSPTGR 53 689****************************************96 PP
2	K-box	16.9	2.6e-07	110	171	17	72
K-box 17 lqqelakLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnel 72 ++q ++kL ++++ Lq ++R +++L++ s+++L+q+e+ L++s+++i +K+++ Manes.06G091500.1.p 110 SSQTVEKLADQVRLLQaqlteIQNRMSYWNNLDKVdSIEHLNQMENSLKESINQIHLQKENI 171 5788999999999999888655557778****966899**************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.707	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-30	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLLFSP TGRPTLFQGE 60 HSNFEDVFAK FAQLTPQERA KRKVESLEVL RKTFKKLDHD VNIQDFLGAS SQTVEKLADQ 120 VRLLQAQLTE IQNRMSYWNN LDKVDSIEHL NQMENSLKES INQIHLQKEN IGRCQLVPLE 180 CNSQFQNGMD LPTIINSMQE AQPLSWLPND SNQHLIISNE QNFLPQRDME GSTSTSLPGC 240 SGYYDPGKHS EIGNLGPVDN MGQDGGALCN LSSNTCLSVQ LDEQFSYHPF SSLNLPEVKK 300 MKPEMQMNSQ GDHSVYQVNG NFELTRPIYD NGHHTWGSAS GPCSVAMFSE NQYHQQAN*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIVLLLFSP TGRPTLFQGE  60
HSNFEDVFAK FAQLTPQERA KRKVESLEVL RKTFKKLDHD VNIQDFLGAS SQTVEKLADQ  120
VRLLQAQLTE IQNRMSYWNN LDKVDSIEHL NQMENSLKES INQIHLQKEN IGRCQLVPLE  180
CNSQFQNGMD LPTIINSMQE AQPLSWLPND SNQHLIISNE QNFLPQRDME GSTSTSLPGC  240
SGYYDPGKHS EIGNLGPVDN MGQDGGALCN LSSNTCLSVQ LDEQFSYHPF SSLNLPEVKK  300
MKPEMQMNSQ GDHSVYQVNG NFELTRPIYD NGHHTWGSAS GPCSVAMFSE NQYHQQAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	3e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.06G091500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021615575.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_021615576.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_021615577.1	0.0	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	1e-104	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2C9VPE4	0.0	A0A2C9VPE4_MANES; Uncharacterized protein
STRING	cassava4.1_027107m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-106	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Manes.06G091500.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]