PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G203600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GRAS | ||||||||
Protein Properties | Length: 451aa MW: 50092.1 Da PI: 6.6994 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 413.1 | 2.5e-126 | 50 | 449 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn........sseelaal 81 +++lL++cAe +s++d+++a++l++ ls +sp+gd+ +Rl++ f++AL+ rl+ +++ ++ l + ++ +++ s+ + Manes.05G203600.1.p 50 MRQLLITCAELISQSDFSAAHRLISVLSASSSPYGDSRERLVHQFVKALSLRLNPHGNAMATVLmNITNLPSSGggggigsaSTA----T 135 589****************************************************999999988455555554488887644333....1 PP GRAS 82 ......................klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRi 144 +++++P+++fshltaNqaIlea+e g++++HiiDfdi++G+QWp+L+qaLa+R+ +pp lRi Manes.05G203600.1.p 136 vsainvgslftreseealqscyLSLNQITPFIRFSHLTANQAILEAIEvGQRAIHIIDFDIMHGVQWPPLMQALAERSsntlYPPPALRI 225 345689999999999888775334***********************9456999************************777778****** PP GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233 Tg g+ + ++l++tg+rL kfA++lg++f+f++l+ +++ + ++ + p+EalaVn+vl lhrll+++ + +L+ +k Manes.05G203600.1.p 226 TGTGH----DLNTLNRTGDRLLKFAQSLGLKFQFHPLLLLNTDPSsLPFAITLLPDEALAVNCVLYLHRLLKDDSRGL---RIFLNRIKA 308 *****....9**************************9555444331477889999***************96655444...47******* PP GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 l+Pkvv+++e+ea+hn++ F++rfleal++y+alfdslea+lp++s+er vE+ ++grei+n+va+ g++rrerhe++e+W+++l++ G Manes.05G203600.1.p 309 LNPKVVTIAEREANHNHPFFFQRFLEALDHYTALFDSLEATLPPNSRERLAVEQIWFGREIMNIVAADGEDRRERHERFESWEMMLRSTG 398 ****************************************************************************************** PP GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 F++vpls +a +qaklllr ++ s+gy++e ++s++lgW++++L+svS+W Manes.05G203600.1.p 399 FTNVPLSPFALSQAKLLLRLHYpSEGYHIEIVNNSFILGWQSHSLFSVSSW 449 *************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.509 | 24 | 429 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.4E-124 | 50 | 449 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MLGSLNSSSS SSLDQEEKEA LDLQYLENLM APPVAPRGTT SSFTPSAIHM RQLLITCAEL 60 ISQSDFSAAH RLISVLSASS SPYGDSRERL VHQFVKALSL RLNPHGNAMA TVLMNITNLP 120 SSGGGGGIGS ASTATVSAIN VGSLFTRESE EALQSCYLSL NQITPFIRFS HLTANQAILE 180 AIEVGQRAIH IIDFDIMHGV QWPPLMQALA ERSSNTLYPP PALRITGTGH DLNTLNRTGD 240 RLLKFAQSLG LKFQFHPLLL LNTDPSSLPF AITLLPDEAL AVNCVLYLHR LLKDDSRGLR 300 IFLNRIKALN PKVVTIAERE ANHNHPFFFQ RFLEALDHYT ALFDSLEATL PPNSRERLAV 360 EQIWFGREIM NIVAADGEDR RERHERFESW EMMLRSTGFT NVPLSPFALS QAKLLLRLHY 420 PSEGYHIEIV NNSFILGWQS HSLFSVSSWH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-63 | 57 | 449 | 26 | 378 | Protein SCARECROW |
5b3h_A | 9e-63 | 57 | 449 | 25 | 377 | Protein SCARECROW |
5b3h_D | 9e-63 | 57 | 449 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G203600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614432.1 | 0.0 | scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-141 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A2C9W0C4 | 0.0 | A0A2C9W0C4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022511m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12926 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-140 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G203600.1.p |
Publications ? help Back to Top | |||
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