PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G153000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26672.2 Da PI: 9.2682 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fs++gkl+ey+s Manes.05G153000.1.p 9 KRIENSTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSTSGKLHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 93.2 | 4.3e-31 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yqk+ g++ +++++e++q+ l+kLk+ + nL+re+R+++Ge+L+++s+++L+ Leq+++++l+ iR++Kn+++ +qi ++ kk ++++e Manes.05G153000.1.p 71 YQKTLGVDIWSSQYEKMQETLKKLKEANMNLRREIRKRMGECLNDMSFEDLRGLEQDMDTALNVIRERKNRVIANQIVTSTKKLRNVEEV 160 78999999********************************************************************************** PP K-box 91 nkaLrkkle 99 +++L +++e Manes.05G153000.1.p 161 HRNLLHEYE 169 ****99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.113 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.36E-40 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-36 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-20 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.759 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MARGKIQIKR IENSTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFST SGKLHEYISP 60 STTTKQVFDQ YQKTLGVDIW SSQYEKMQET LKKLKEANMN LRREIRKRMG ECLNDMSFED 120 LRGLEQDMDT ALNVIRERKN RVIANQIVTS TKKLRNVEEV HRNLLHEYEA RARDEDPHYG 180 LVDNEGDYGC VIGYQNGGQA PRDMFALRLQ PNHPNLHSGA GSDLTTYSLL D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G153000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612346.1 | 1e-174 | floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 1e-117 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A2C9VWG1 | 1e-173 | A0A2C9VWG1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015343m | 1e-174 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-98 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G153000.1.p |
Publications ? help Back to Top | |||
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