PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.05G117400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NF-YB | ||||||||
Protein Properties | Length: 136aa MW: 15235.2 Da PI: 4.4256 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 66.8 | 4.3e-21 | 2 | 73 | 14 | 85 |
NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++i+k++lP + ++++da++++ ec +efi +v+se+++ c re+++ti+++ +l al lGf +y+e++ + Manes.05G117400.1.p 2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALQVLGFGEYIEEVYT 73 68*****************************************************************99854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.51E-30 | 2 | 121 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-18 | 2 | 59 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.3E-34 | 2 | 119 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE VCSREEKRTI APEHVLKALQ 60 VLGFGEYIEE VYTAYEQHKI ETMDSLRGGK WSNGAEMTEE EAVAEQQRMF AEARARMNGG 120 AIAPKQPESD RSLES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 6e-31 | 1 | 114 | 21 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.05G117400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021613633.1 | 2e-96 | protein Dr1 homolog isoform X2 | ||||
Swissprot | P49592 | 4e-76 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A2C9VWT8 | 5e-95 | A0A2C9VWT8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_018195m | 9e-96 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-80 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Manes.05G117400.1.p |
Publications ? help Back to Top | |||
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