PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G043700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 476aa    MW: 51559.6 Da    PI: 9.9373
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G043700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC741.6e-23145188144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRC+r+v++g+k+CErH+hrgr+r rk+ e
  Manes.05G043700.1.p 145 DPEPGRCRRTDGKKWRCKRNVVSGQKYCERHMHRGRQRLRKTLE 188
                          79************************************999865 PP
2WRC63.72.8e-20351389240
                  WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                           epgrC+RtDGKkWRC+r+v++ +k+CE H+hrg +++ 
  Manes.05G043700.1.p 351 VEPGRCKRTDGKKWRCRRDVVPSEKYCEMHMHRGAKKRV 389
                          59********************************77654 PP
3QLQ41.93.1e-1574108337
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          +TaaQl +L +Q+ +yKy+aa++PvP+ L+++i+k
  Manes.05G043700.1.p  74 LTAAQLGELQRQVIIYKYIAAGLPVPSSLVLPISK 108
                          8********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-672108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.32573108IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.5E-1174106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.028145189IPR014977WRC domain
PfamPF088792.8E-20146186IPR014977WRC domain
PROSITE profilePS5166720.79350394IPR014977WRC domain
PfamPF088793.8E-17352389IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEAKTLRRSS AFSDYLLSFS GGGPHGSDED ELRKLIEVKK SYQVREGAES PSIKLRNGIG  60
DHRGSVIKYG KALLTAAQLG ELQRQVIIYK YIAAGLPVPS SLVLPISKNV ASSFGFDNGG  120
NHRLNPSLSV VGFSPLAVDY RNMMDPEPGR CRRTDGKKWR CKRNVVSGQK YCERHMHRGR  180
QRLRKTLEVD APNAIPLNNS SKTPQNSKVS GSSSIHCNTA CSEVDAKMTG STKAAFMVSC  240
PKSISASLNP RVIAGCVMIP STVPTDSTIT TAIVGTNEGR SNKNHKTETI VDMNVNCSEN  300
VSLKNLIGGN NSRNITNTKG LAFQGLNFSP KSVLQVQNCG TTCLCRNYID VEPGRCKRTD  360
GKKWRCRRDV VPSEKYCEMH MHRGAKKRVE ASQSPALLNA NPEVISTTSS CMHPTAIFPK  420
RGHDINLNTN LSISIAANPQ PVVIGNSSDT TISNNSDTTI SNPIIASCKD GDFSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G043700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611877.10.0growth-regulating factor 9
TrEMBLA0A2C9VUM20.0A0A2C9VUM2_MANES; Uncharacterized protein
STRINGcassava4.1_032797m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.12e-45growth-regulating factor 9