PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G133100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92702.2 Da    PI: 6.4666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G133100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.1e-171876357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++  +++    +++ +q+kvWFqNrR +ek+
  Manes.04G133100.1.p 18 KYVRYTPEQVEALERFYHECPKPSSIRRQQFIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                         5679*****************************************************97 PP
2START182.42.5e-571623702205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g
  Manes.04G133100.1.p 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAMDVLNVLPTAngG 250
                          789*******************************************************.8888888888****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +
  Manes.04G133100.1.p 251 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmpsVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 340
                          *************************************************9888899********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s+++ ++kt++a+l+++++
  Manes.04G133100.1.p 341 SVPEVLRPLYESSTVLAQKTTMAALRQLRQ 370
                          **************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1431377IPR001356Homeobox domain
SMARTSM003892.9E-141581IPR001356Homeobox domain
SuperFamilySSF466891.45E-151779IPR009057Homeodomain-like
CDDcd000866.81E-161878No hitNo description
PfamPF000464.9E-151976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-182076IPR009057Homeodomain-like
CDDcd146862.76E-670109No hitNo description
PROSITE profilePS5084825.584152367IPR002913START domain
CDDcd088752.63E-80156372No hitNo description
Gene3DG3DSA:3.30.530.205.0E-23161368IPR023393START-like domain
SMARTSM002341.5E-41161371IPR002913START domain
SuperFamilySSF559616.46E-38161373No hitNo description
PfamPF018529.5E-55162370IPR002913START domain
PfamPF086709.3E-53696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAMSCKDGKQ PANLDNGKYV RYTPEQVEAL ERFYHECPKP SSIRRQQFIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
HTQNTTLATK DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCTGVAARA CGLVGLEPTR VAEILKDRPS WFRDCRAMDV  240
LNVLPTANGG TIELLYMQLY APTTLAPARD FWLLRYTSVL EDGSLVICER SLKNTQNGPS  300
MPSVQHFVRA EMLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTVLAQKT  360
TMAALRQLRQ IAQEVSQSNL TNWGRRPAAL RALSQRLSRG FNEALNGFTD EGWSVMGNDG  420
MDDVTILVNS SPEKLMGLNL SFSNGFSAVS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNIDAYS AAAIKVGPCS LLGSRVGSYG GQVILPLAHT IEHEEFLEVI KLEGMGHSPE  540
DAIMPRDMFL LQLCSGMDEN AIGTCAELIF APIDASFADD APLLPSGFRI IPLDSAKEAS  600
SPNRTLDLAS ALETGPAGNK SSTDYSANSG CMRSVMTIAF EFAFESHMQE HVASMARQYV  660
RSIISSVQRV ALALSPSHLG SHAGLRSPLG TPEAQTLARW ICQSYRCYLG VELLKSSSEG  720
SETILKTLWH HSDAIMCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KIFDDHGRKT  780
LCSEFPQIMQ QGFACLQGGI CLSSMGRPVS YERAVAWKVL NEEETPHCIC FMFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G133100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610318.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2C9W2380.0A0A2C9W238_MANES; Uncharacterized protein
STRINGcassava4.1_001674m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]