PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.04G012800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 290aa MW: 31591.9 Da PI: 6.7392 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Manes.04G012800.1.p 121 YECKTCNRSFPSFQALGGHRASH 143 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 195 | 217 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F++ L H+r+H Manes.04G012800.1.p 195 HECAICGSEFTSGQALGGHMRRH 217 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.0E-13 | 120 | 145 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.83E-8 | 120 | 143 | No hit | No description |
SMART | SM00355 | 0.06 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.83E-8 | 190 | 217 | No hit | No description |
Pfam | PF13912 | 1.6E-10 | 195 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 195 | 217 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.055 | 195 | 222 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 197 | 217 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MAMELAQEEF MGSNDPSQIV KGKRSKRLRS SSAGITSSSS SGTCGGSGGG EPEHVSISSP 60 TSCSDEIYES TEEEEDMANC LILLAQGDGP RRQQVMRDEN NRKFSEVSAN PTTNKASFFV 120 YECKTCNRSF PSFQALGGHR ASHKKPKSII SPLLDELQDC QLNKSSPDHH LLHPLSLQIS 180 NKSCSFVGNN KSKIHECAIC GSEFTSGQAL GGHMRRHRAN SSANNNQVVI SATDSSSEDQ 240 IKQRNILALD LNLPAPEEDH HHHRESKFQF PSTQQALAFS APTLVDCHY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.04G012800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609938.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2C9VYK3 | 0.0 | A0A2C9VYK3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_031586m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 5e-50 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.04G012800.1.p |