PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G004100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bZIP

Protein Properties

Length: 493aa MW: 54471.2 Da PI: 7.2728

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G004100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	188	229	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Manes.04G004100.1.p 188 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 229 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-4	185	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	187	231	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	188	230	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-7	189	231	No hit	No description
CDD	cd14708	1.40E-23	189	241	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.4E-8	190	233	No hit	No description
PROSITE pattern	PS00036	0	192	207	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-32	270	345	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MASHGVGETG LSDSGPSNHH LPYAALHGIN APSTSFFNQE GSPFDFGELE EAVLQGVKIR 60 NDEAKAPLFR PAATLEMFPP WPIRFQQTPR GSSKSGGEST DSGSAVNTLS SKAEAQLDSD 120 SPISKKASSS DHHQAFDQKH LQLQQHQQQM EMASNTSRTG APSELNPSPA KLPQEKRKGS 180 TSEKQLDAKT LRRLAQNREA ARKSRLRKKA YVQQLESSRI KLTQLEQDLQ RARQQGLFLG 240 GCSGVGGNIS PGAAIFDMEY ARWLEDDHRH MSELRTGLQA HLSDGDLRVI VDRYISHYDE 300 IFRLKGVAAK SDVFHLVTGM WSTPAERCFL WMGGFRPSEL IKMLTSQLDP LTDQQIVGIC 360 SLQHSSQQAE EALSQGLEQL QQSLVDTIAS GQIVDGMQQM AVALGKLANL EGFVRQADNL 420 RQQTLHQLRR ILTVRQAARC FLVIGEYYGR LRALSSLWAS RPRESLMGEE NACQTGSDLQ 480 MVEPPPNHFS NF*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MASHGVGETG LSDSGPSNHH LPYAALHGIN APSTSFFNQE GSPFDFGELE EAVLQGVKIR  60
NDEAKAPLFR PAATLEMFPP WPIRFQQTPR GSSKSGGEST DSGSAVNTLS SKAEAQLDSD  120
SPISKKASSS DHHQAFDQKH LQLQQHQQQM EMASNTSRTG APSELNPSPA KLPQEKRKGS  180
TSEKQLDAKT LRRLAQNREA ARKSRLRKKA YVQQLESSRI KLTQLEQDLQ RARQQGLFLG  240
GCSGVGGNIS PGAAIFDMEY ARWLEDDHRH MSELRTGLQA HLSDGDLRVI VDRYISHYDE  300
IFRLKGVAAK SDVFHLVTGM WSTPAERCFL WMGGFRPSEL IKMLTSQLDP LTDQQIVGIC  360
SLQHSSQQAE EALSQGLEQL QQSLVDTIAS GQIVDGMQQM AVALGKLANL EGFVRQADNL  420
RQQTLHQLRR ILTVRQAARC FLVIGEYYGR LRALSSLWAS RPRESLMGEE NACQTGSDLQ  480
MVEPPPNHFS NF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G004100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609551.1	0.0	transcription factor TGA9-like isoform X4
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2C9VYA1	0.0	A0A2C9VYA1_MANES; Uncharacterized protein
STRING	cassava4.1_006304m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.04G004100.1.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]