PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G206400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 339aa    MW: 37662.8 Da    PI: 6.6779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G206400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.51.5e-34182240159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s+fprsYYrCtsagC vkk+vers+edp++v++tYeg+H+h+
  Manes.03G206400.1.p 182 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHTHP 240
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381306.2E-9918336IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.805.6E-36167242IPR003657WRKY domain
SuperFamilySSF1182904.45E-30174242IPR003657WRKY domain
PROSITE profilePS5081133.327177242IPR003657WRKY domain
SMARTSM007741.5E-41182241IPR003657WRKY domain
PfamPF031067.3E-28183240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEKREDHHRQ MMKNEISMAN STTFITEEMP ITSFSAFSSS SSTTPTTSAS IFDMMMPYDH  60
IADKASLGFM DLLDGNQDFG TSLLLDCFQL QPPPILPHQP LPSPASTVPE SSEVLNTPAT  120
PNSSSISSSS NEAGNDSQAK AGDEEEQDQE KNKKQLKPKK KNQKRQREPR FAFMTKSEVD  180
HLDDGYRWRK YGQKAVKNSP FPRSYYRCTS AGCGVKKRVE RSSEDPTIVV TTYEGQHTHP  240
SPITPRGSIG LLPDSGCFGA ATSSFVLPQS HYQQQQNAYM YSSSPSLNIS TNSSFNPPFS  300
PSFLQERRLS HSSASLFRDH GLLQDIVPSQ MRKETPEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-281752421077Probable WRKY transcription factor 4
2lex_A3e-281752421077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G206400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276220.0KT827622.1 Manihot esculenta WRKY transcription factor 47 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606509.10.0probable WRKY transcription factor 48
SwissprotO229009e-65WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2C9W9E50.0A0A2C9W9E5_MANES; Uncharacterized protein
STRINGcassava4.1_011940m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-55WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]