PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G199300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 28942.7 Da PI: 7.0332 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.1e-21 | 88 | 138 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++g Manes.03G199300.1.p 88 SIYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 138 57********.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.80E-34 | 88 | 148 | No hit | No description |
Pfam | PF00847 | 6.3E-15 | 88 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 88 | 147 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.551 | 89 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-37 | 89 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 89 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MCGGAIISDF VAVKRSRRLN AEDLWSDLDT LSNFLGLDYP NNANKEQIST QLDLELHEKP 60 KLKLNQVEKT EKGSTVMESN KTQRIRKSIY RGIRQRPWGK WAAEIRDPHK GVRVWLGTYN 120 TAEEAARAYD EAAKRIRGDK AKLNFAQSPA ATQAPPLPPQ SKKRCPMMAP AATVQSCSGG 180 AVAAPAQQPY MGVGHEKELL SSDYELKEQI LNLETFLGLE PEMAADQLSG SSCETSESVD 240 LWMLDDLVSH HQNQRWLSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 90 | 145 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 90 | 145 | 6 | 62 | ATERF1 |
3gcc_A | 2e-21 | 90 | 145 | 6 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G199300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914649 | 3e-89 | JQ914649.1 Hevea brasiliensis AP2/ERF super family protein (ERF5) mRNA, complete cds. | |||
GenBank | KC556915 | 3e-89 | KC556915.1 Hevea brasiliensis ethylene-responsive transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021606660.1 | 0.0 | ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A2C9WBF2 | 0.0 | A0A2C9WBF2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014267m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-47 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G199300.1.p |