PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G173200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HSF | ||||||||
Protein Properties | Length: 359aa MW: 41376.7 Da PI: 4.8254 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.1 | 2.2e-36 | 41 | 132 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+i+ed ++++++sws+ +nsfvv+d+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k Manes.03G173200.1.p 41 FLTKTYDIVEDTATNHIVSWSRGNNSFVVWDPQTFTMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 121 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i+r+k+ Manes.03G173200.1.p 122 HLLKNIRRRKN 132 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.31E-35 | 37 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-61 | 37 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.5E-39 | 37 | 130 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.7E-19 | 41 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.2E-32 | 41 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.7E-19 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 80 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.7E-19 | 92 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MNRLQRVKEE YAGASSSYSG ITSAAIPQPM EGLQDAGPPP FLTKTYDIVE DTATNHIVSW 60 SRGNNSFVVW DPQTFTMSLL PRYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ 120 KHLLKNIRRR KNLHPQVSQH CLDPCVEVGR FGLDGEVDRL RRDKEVLMME LVKLRQQQQN 180 TKCYLKLMEY RLKRTETKQQ QMMGFLAKAM RNPNFMQQLV QQRDMRKELE EAISKKRRLP 240 IDQGPSNVQV GEFSHGEVLE TFVKIEPQEL GDLSEFEVSE LDALAMTMQG VSGSQQNMEE 300 ECLERHEPED KDLDEGFWDD LLNEDTVEEM DILGGDVEDI DALVEQLGYL GSSPKQTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-25 | 19 | 130 | 5 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 19 | 130 | 5 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 19 | 130 | 5 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G173200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021606861.1 | 0.0 | heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-141 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A2C9W9T2 | 0.0 | A0A2C9W9T2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029306m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-143 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G173200.1.p |