PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G059200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 853aa    MW: 93832.8 Da    PI: 5.592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G059200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-193391357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Manes.03G059200.1.p 33 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 91
                         5679*****************************************************97 PP
2START183.51.1e-571783862205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+++s+g  g
  Manes.03G059200.1.p 178 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSFGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNALSTGngG 266
                          7899******************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRae+lpSg+li+p+++g+s +++v+h+dl+ +
  Manes.03G059200.1.p 267 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLSNTQNGPSvppTQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 356
                          *************************************************9999************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s++  ++kt++a+l+++++
  Manes.03G059200.1.p 357 SVPEVLRPLYESSTLLAQKTTMAALRHLRQ 386
                          *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6942892IPR001356Homeobox domain
SMARTSM003893.4E-153096IPR001356Homeobox domain
SuperFamilySSF466897.27E-173296IPR009057Homeodomain-like
CDDcd000863.76E-163393No hitNo description
PfamPF000461.7E-163491IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-183591IPR009057Homeodomain-like
CDDcd146861.17E-685124No hitNo description
PROSITE profilePS5084826.637168396IPR002913START domain
CDDcd088754.30E-82172387No hitNo description
Gene3DG3DSA:3.30.530.205.8E-24177383IPR023393START-like domain
SuperFamilySSF559611.17E-38177389No hitNo description
SMARTSM002341.7E-46177387IPR002913START domain
PfamPF018523.2E-55178386IPR002913START domain
PfamPF086702.3E-51711851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MMMMEKCYDA EVMMAVTSTC KDGGSKIAMD NGKYVRYTPE QVEALERLYY ECPKPSSMRR  60
QQLIRECPIL SNIEPKQIKV WFQNRRCREK QRKEASRLQA VNRKLTAMNK LLMEENDRLQ  120
KQVSQLVYEN SYFRQQTQNA TDLATTDTSC ESVVISGQLH LTPQNQPRDA SPAGLLSIAE  180
ETLAEFLSKA TGTAVEWVQM PGMKPGPDSF GIVAISHGCP GVAARACGLV GLEPTRVAEI  240
LKDRPSWFRD CRAVDVLNAL STGNGGTIEL LYMQLYAPTT LAPARDFWLL RYTSVLEDGS  300
LVVCERSLSN TQNGPSVPPT QNFVRAEMLP SGYLIRPCEG GGSIIHIVDH MDLEPWSVPE  360
VLRPLYESST LLAQKTTMAA LRHLRQISQE VSQPNVSGWG RRPAALRALS QRLSKGFNEA  420
VNGFTDEGWS MLESDGIDDV TVLVNSSPGK ILGLNISYAS GFPSMSNGVL CAKASMLLQN  480
VPPAILLRFL REHRSEWADS GIDAYAAAAV KAGPCTLPVP RVGNFGGQVI LPLAHTIEHE  540
EFMEVIKLEN MGYREDMIMP GDIFLLQFCT GVDENAVGTC AELIFAPIDA SFSDDAPIIP  600
SGFRIIPLDS RMDASSPNRT LDLASALDVG PTGNKASGDV SGHCGSTKSV MTIAFQFAFE  660
LHLQENVASM ARQYVRSVVA SVQRVALALS PSRFGPQAGF RPPPGTPEAL TLARWICQSY  720
RCYLGMELLK SEGSESILKS LWHHSDAIMC CSLKALPVFT FANQGGLDML ETTLVALQDI  780
TLEKIFDDNG RKTLCSEFPQ IMQQGFMCLQ GGICLSSMGR PVSYERAVAW KVLNEEETAH  840
CICFMFINWT FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G059200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608402.10.0homeobox-leucine zipper protein ATHB-8-like isoform X1
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2C9W4W10.0A0A2C9W4W1_MANES; Uncharacterized protein
STRINGcassava4.1_001600m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]