PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G028900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 465aa    MW: 52485.3 Da    PI: 7.0572
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G028900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.26.9e-36461881128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..tk. 79 
                          lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+  t+ 
  Manes.03G028900.1.p  46 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqTEc 133
                          799************.99*********5553344444434666646**********.555666799******************745225 PP

                  NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v+  +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Manes.03G028900.1.p 134 dmqggETRWHKTGKTRPVML-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188
                          55544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3842207IPR003441NAC domain
PROSITE profilePS5100532.99246207IPR003441NAC domain
PfamPF023652.5E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSKSNLGSIS SSDLIDAKLE EHQLCGSKQC PGCGHKIEGK PDWVGLPAGV KFDPTDQELI  60
EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDMQGGET RWHKTGKTRP VMLNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWTDRTA ITGEGSNDPN SRRDSGSGSC  240
SSKEIIPHRD EITGAGVAAA LSSYSAIDIQ QLKSDHFGFP PFRKSFDEVG IGEASTAREA  300
PVSGTCNDIG EHHQRPHHMA HDHHQQQPQH HHVHHQIATA AFQISRPSHP ISAIISPPPL  360
HHTSIILEED PYHVSRLMLQ NEIQQQQHHH HHHQQQQQHH HHQQQQQQQH HKLGGRSASG  420
LEELIMGCTS TDIKEESSIA NPQEAEWLKY SSFWPDPDNQ DHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G028900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052090.0KR605209.1 Manihot esculenta NAC transcription factors 71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606168.10.0AF4/FMR2 family member 4-like isoform X1
RefseqXP_021606169.10.0AF4/FMR2 family member 4-like isoform X1
RefseqXP_021606170.10.0AF4/FMR2 family member 4-like isoform X1
RefseqXP_021606171.10.0AF4/FMR2 family member 4-like isoform X1
RefseqXP_021606172.10.0AF4/FMR2 family member 4-like isoform X1
RefseqXP_021606173.10.0AF4/FMR2 family member 4-like isoform X1
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A251L6B60.0A0A251L6B6_MANES; Uncharacterized protein
STRINGcassava4.1_027836m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-174NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]