PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G264700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | GRF | ||||||||
Protein Properties | Length: 486aa MW: 52167.5 Da PI: 9.4218 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.4e-24 | 139 | 183 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+++v++g+k+CE H+hrgr+rsrk++e+ Manes.01G264700.1.p 139 DPEPGRCRRTDGKKWRCKKNVVSGHKYCEQHMHRGRKRSRKPVEA 183 79****************************************997 PP | |||||||
2 | WRC | 63.9 | 2.3e-20 | 368 | 404 | 2 | 38 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 epgrCrRtDGKkWRC+r+v++g+k+C H+hrg ++ Manes.01G264700.1.p 368 VEPGRCRRTDGKKWRCRRDVVPGEKYCKIHMHRGAKK 404 59********************************776 PP | |||||||
3 | QLQ | 35.3 | 3.5e-13 | 70 | 104 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +T aQl +L +Q+ +yKy+a ++PvP+ L+++ +k Manes.01G264700.1.p 70 LTEAQLVELQRQVIIYKYIATGLPVPSTLVLPFWK 104 8*******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.9E-5 | 68 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 15.744 | 69 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.7E-8 | 70 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 139 | 183 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-20 | 140 | 182 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.397 | 367 | 411 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.0E-18 | 369 | 405 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MVMGAIHPQS PASRSGPCKG EDKVRTLATE VKKGDDDQVK EEAASPSMKL CIGIGDDDRG 60 PSIRHGKALL TEAQLVELQR QVIIYKYIAT GLPVPSTLVL PFWKSVDSSS GSVNGEILGP 120 YPSFEGYSPQ EFDYRNMMDP EPGRCRRTDG KKWRCKKNVV SGHKYCEQHM HRGRKRSRKP 180 VEASQMHTAN ATSLKNPSKT SQNPSTSNSI SIAATLSNNT GISHKNYGTA CSSANAQIIG 240 CTTEAATVVS GQKAISTSWN PRGISGCLNA NAIMITSSVP TDSTITTATT GGNKGGSKYN 300 HETNSFADRN VNCSDSIGLK NLIYEGNSSR NFKNAKGVTS QGLNFSPKSV LQVQGCGTAY 360 LYRSYVDVEP GRCRRTDGKK WRCRRDVVPG EKYCKIHMHR GAKKPMEASQ SPALLNATPE 420 TSTTTATLLK KADGINLNTT LSISLSANHQ LGTNDTTSDT TISNNSDTII SNTIIAPCEN 480 GDSSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G264700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623024.1 | 0.0 | growth-regulating factor 9-like isoform X1 | ||||
TrEMBL | A0A2C9WPF6 | 0.0 | A0A2C9WPF6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032797m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9228 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 2e-47 | growth-regulating factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G264700.1.p |